Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6I49_RS05995 Genome accession   NZ_CP068206
Coordinates   803367..803894 (-) Length   175 a.a.
NCBI ID   WP_087011772.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 798367..808894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I49_RS05975 (I6I49_05970) - 798736..799575 (-) 840 WP_201952676.1 hypothetical protein -
  I6I49_RS05980 (I6I49_05975) aroB 799583..800668 (-) 1086 WP_201952677.1 3-dehydroquinate synthase -
  I6I49_RS05985 (I6I49_05980) aroK 800699..801232 (-) 534 WP_201952680.1 shikimate kinase AroK -
  I6I49_RS05990 (I6I49_05985) pilQ 801270..803303 (-) 2034 Protein_811 type IV pilus secretin PilQ -
  I6I49_RS05995 (I6I49_05990) pilP 803367..803894 (-) 528 WP_087011772.1 pilus assembly protein PilP Machinery gene
  I6I49_RS06000 (I6I49_05995) pilO 803894..804631 (-) 738 WP_130235305.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I49_RS06005 (I6I49_06000) pilN 804628..805284 (-) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  I6I49_RS06010 (I6I49_06005) - 805284..806341 (-) 1058 Protein_815 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19355.56 Da        Isoelectric Point: 7.1331

>NTDB_id=527968 I6I49_RS05995 WP_087011772.1 803367..803894(-) (pilP) [Acinetobacter johnsonii strain FDAARGOS_1092]
MKYQNLMLSLCVGLFLVGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLARQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=527968 I6I49_RS05995 WP_087011772.1 803367..803894(-) (pilP) [Acinetobacter johnsonii strain FDAARGOS_1092]
ATGAAATATCAAAATCTCATGCTTAGTCTCTGCGTAGGGTTGTTCCTTGTCGGTTGTGATTCGCGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGTAATCAGCCACCGTTACCGATTGAACCTGCGCCAGATTTCCCACCTGTCCCGACTTTTA
ATTATGCTGCGCATCAATTAAAAAGTCCGTTTATGCCAAGCTCGTTAGCGGCTGAACTGAAGATTATGGCTGGAAAGCGC
GTTTATCCAAACCTAGCTCGCCAATTACAACCCTTGGAAAGCTATGCGATTGAATCGCTTAACATGAAAGGCAGCATGCG
CGGACAAAATGGACAAATTTTGGCGTTGATTCAAACACCTGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCTACACAAATTGATTTGATTGAAATTATTCCGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76.571

100

0.766
  comL Acinetobacter baylyi ADP1

72

100

0.72