Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6I49_RS06005 Genome accession   NZ_CP068206
Coordinates   804628..805284 (-) Length   218 a.a.
NCBI ID   WP_005401354.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 799628..810284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I49_RS05985 (I6I49_05980) aroK 800699..801232 (-) 534 WP_201952680.1 shikimate kinase AroK -
  I6I49_RS05990 (I6I49_05985) pilQ 801270..803303 (-) 2034 Protein_811 type IV pilus secretin PilQ -
  I6I49_RS05995 (I6I49_05990) pilP 803367..803894 (-) 528 WP_087011772.1 pilus assembly protein PilP Machinery gene
  I6I49_RS06000 (I6I49_05995) pilO 803894..804631 (-) 738 WP_130235305.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I49_RS06005 (I6I49_06000) pilN 804628..805284 (-) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  I6I49_RS06010 (I6I49_06005) - 805284..806341 (-) 1058 Protein_815 pilus assembly protein PilM -
  I6I49_RS06015 (I6I49_06010) ponA 806508..809036 (+) 2529 WP_201952683.1 penicillin-binding protein PBP1a -
  I6I49_RS06020 (I6I49_06015) - 809068..809874 (-) 807 WP_114836330.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24226.65 Da        Isoelectric Point: 5.1439

>NTDB_id=527970 I6I49_RS06005 WP_005401354.1 804628..805284(-) (pilN) [Acinetobacter johnsonii strain FDAARGOS_1092]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPDATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=527970 I6I49_RS06005 WP_005401354.1 804628..805284(-) (pilN) [Acinetobacter johnsonii strain FDAARGOS_1092]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCGTGGTTTTTTTACAGTCAAAAACTTGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTTCAATTAAAGTCATTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTAGAACGGATGAAATTGATCCAAGGTTTGCAAGGTCAACGCCCTGTAGCTGTGCGTTTGGTCGATGAAATGGTGCG
TGTCACACCGAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGTAACCTAGAAGCATCGGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTGATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCGGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.856

95.872

0.67
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665