Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I6I50_RS06915 Genome accession   NZ_CP068195
Coordinates   1411115..1412248 (-) Length   377 a.a.
NCBI ID   WP_159153409.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1406115..1417248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS06885 (I6I50_06885) - 1406322..1406912 (-) 591 WP_017396937.1 hypothetical protein -
  I6I50_RS06890 (I6I50_06890) - 1407048..1407422 (-) 375 WP_062031766.1 RcnB family protein -
  I6I50_RS06895 (I6I50_06895) - 1407621..1408166 (-) 546 WP_058868685.1 glutathione peroxidase -
  I6I50_RS06900 (I6I50_06900) - 1408290..1408844 (-) 555 WP_005401885.1 hypothetical protein -
  I6I50_RS06905 (I6I50_06905) - 1409180..1410100 (+) 921 WP_004684446.1 DMT family transporter -
  I6I50_RS06910 (I6I50_06910) - 1410500..1411069 (-) 570 WP_159153410.1 L-threonylcarbamoyladenylate synthase -
  I6I50_RS06915 (I6I50_06915) dprA 1411115..1412248 (-) 1134 WP_159153409.1 DNA-processing protein DprA Machinery gene
  I6I50_RS06920 (I6I50_06920) tsaP 1412271..1413425 (-) 1155 WP_201707057.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6I50_RS06925 (I6I50_06925) def 1413546..1414079 (+) 534 WP_004684452.1 peptide deformylase -
  I6I50_RS06930 (I6I50_06930) - 1414169..1414606 (+) 438 WP_159153407.1 DUF2946 family protein -
  I6I50_RS06935 (I6I50_06935) - 1414679..1416700 (+) 2022 WP_159153406.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41704.27 Da        Isoelectric Point: 6.6420

>NTDB_id=527936 I6I50_RS06915 WP_159153409.1 1411115..1412248(-) (dprA) [Acinetobacter johnsonii strain FDAARGOS_1093]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNLQIWPNLGLHKSHLQRVTEIQTPAGQLKLQTLLQDV
QASCDFILLDTDSHYPSQLLPYADRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKYQRTIAVMGTGLDLTYPSQHQTLRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAQRAAEQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQETTPSASIEIPS
NLLELYNQLDWVGQNMDQLNFKLNTDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=527936 I6I50_RS06915 WP_159153409.1 1411115..1412248(-) (dprA) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCGAGCTTTCA
AAAACTACAGCAGCATTTTGGCACAAGCACAAAAGCTGTTGCTGCCTCCAATCTTCAGATCTGGCCAAATCTCGGCTTAC
ACAAAAGCCATCTACAACGTGTCACAGAAATCCAAACGCCTGCTGGCCAACTCAAATTACAAACTTTACTGCAGGACGTC
CAAGCCAGCTGTGATTTTATTTTACTTGATACTGACAGTCATTATCCCTCGCAGCTGCTGCCCTATGCTGACCGACCACC
GATTTTATTTGGTCAGGGCAATCCACAAAGTCTACTCCAGCCTCAAGTTGCTATCGTCGGCAGTCGAAAACCCAGTCCGC
ACGGCAAGCAAGTGGCTTATGACTTTGCCTATTACCTCGCCGAAAAGGGCTTTTATATTTGCAGTGGTTTAGCTGAAGGC
ATTGATGCAGCGGCACATCAGGGCGGCTTAAAATATCAACGTACCATTGCAGTGATGGGCACGGGCTTAGATCTCACTTA
TCCTTCCCAACATCAAACACTGCGTACGCAAATATTAGAAAATAATGGCTGTATTATTACTGAATTTTTACCACATACAC
CGCCTTTACAGCATAATTTTCCACGACGCAACCGCATCGTCAGTGCACTGAGTTTAGGGGTTGTGGTTGCAGAGGCAGCA
CTCAAAAGTGGCTCTCTAGGAACAGCCCAAAGAGCCGCAGAGCAAGGGAAAACCATTTTTGCGATTCCCGGTCATATTTA
CAGTGAACACCATCAAGGCTGTCATCAACTGATCCGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAACCACCCCAAGCGCTAGTATTGAGATCCCATCT
AATTTACTCGAACTTTATAATCAACTGGATTGGGTGGGACAAAATATGGATCAACTTAATTTCAAACTTAACACCGATAT
TGCCACACTCACCAGCCAGTTAATGGAACTGGAAATTTTGGGGCTTGCACAACAACAAGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

67.021

99.735

0.668

  dprA Acinetobacter baumannii D1279779

65.957

99.735

0.658

  dprA Acinetobacter baylyi ADP1

60.892

100

0.615