Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   I6I50_RS06920 Genome accession   NZ_CP068195
Coordinates   1412271..1413425 (-) Length   384 a.a.
NCBI ID   WP_201707057.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407271..1418425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS06895 (I6I50_06895) - 1407621..1408166 (-) 546 WP_058868685.1 glutathione peroxidase -
  I6I50_RS06900 (I6I50_06900) - 1408290..1408844 (-) 555 WP_005401885.1 hypothetical protein -
  I6I50_RS06905 (I6I50_06905) - 1409180..1410100 (+) 921 WP_004684446.1 DMT family transporter -
  I6I50_RS06910 (I6I50_06910) - 1410500..1411069 (-) 570 WP_159153410.1 L-threonylcarbamoyladenylate synthase -
  I6I50_RS06915 (I6I50_06915) dprA 1411115..1412248 (-) 1134 WP_159153409.1 DNA-processing protein DprA Machinery gene
  I6I50_RS06920 (I6I50_06920) tsaP 1412271..1413425 (-) 1155 WP_201707057.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6I50_RS06925 (I6I50_06925) def 1413546..1414079 (+) 534 WP_004684452.1 peptide deformylase -
  I6I50_RS06930 (I6I50_06930) - 1414169..1414606 (+) 438 WP_159153407.1 DUF2946 family protein -
  I6I50_RS06935 (I6I50_06935) - 1414679..1416700 (+) 2022 WP_159153406.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42282.30 Da        Isoelectric Point: 8.2188

>NTDB_id=527937 I6I50_RS06920 WP_201707057.1 1412271..1413425(-) (tsaP) [Acinetobacter johnsonii strain FDAARGOS_1093]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGIISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADERVIAGKGQTVYARGQGIEVGQRYAIYREGKPYIVTDAEGKKQNLGLELTQVASAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=527937 I6I50_RS06920 WP_201707057.1 1412271..1413425(-) (tsaP) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGCTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCAGGCATCATTTCAACAGCTCAAGCTGCGCCTACACGAAATTACAATCCGCCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTGTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCGGGTGACCGCTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATCATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGTGTTGAATCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGTACCATTCTTTCCGAGGAATCTTTGGAAGGTACACCGTATATCGTCGGTGCTGCCGATGAGCGTGTGATTGCAGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCAAACCTT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGCTTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTAGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.661