Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I50_RS04660 Genome accession   NZ_CP068195
Coordinates   924997..925581 (-) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 919997..930581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS04645 (I6I50_04645) - 920160..922073 (-) 1914 WP_227556911.1 integrase -
  I6I50_RS04650 (I6I50_04650) - 922066..923628 (-) 1563 WP_407079118.1 site-specific integrase -
  I6I50_RS04655 (I6I50_04655) - 923615..924841 (-) 1227 WP_201706890.1 site-specific integrase -
  I6I50_RS04660 (I6I50_04660) ssb 924997..925581 (-) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  I6I50_RS04665 (I6I50_04665) - 925633..926997 (-) 1365 WP_087011846.1 MFS transporter -
  I6I50_RS04670 (I6I50_04670) - 927157..928236 (-) 1080 WP_058870674.1 DUF475 domain-containing protein -
  I6I50_RS04675 (I6I50_04675) tenA 928448..929122 (+) 675 WP_004691671.1 thiaminase II -
  I6I50_RS04680 (I6I50_04680) - 929284..929657 (+) 374 Protein_908 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=527933 I6I50_RS04660 WP_004691666.1 924997..925581(-) (ssb) [Acinetobacter johnsonii strain FDAARGOS_1093]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=527933 I6I50_RS04660 WP_004691666.1 924997..925581(-) (ssb) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCCACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACCGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGTGGTTACGGCGGCAACCCTGCAGCAGGTAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423