Detailed information NTG0527907

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: K7I17_RS13360
• Genome accession: NZ_CP082279
• Coordinates: 2590433..2591701 (+)
• Length: 422 a.a.
• NCBI ID: WP_013353023.1
• Uniprot ID: A0A9P1NII9
• Organism: Bacillus amyloliquefaciens strain Bam1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2585433..2596701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7I17_RS13340 (K7I17_13340)	-	2586804..2587424 (-)	621	WP_088030693.1	lipopolysaccharide assembly protein LapB	-
K7I17_RS13345 (K7I17_13345)	mnmA	2587512..2588627 (-)	1116	WP_014470768.1	tRNA 2-thiouridine(34) synthase MnmA	-
K7I17_RS13350 (K7I17_13350)	-	2588664..2589803 (-)	1140	WP_013353021.1	cysteine desulfurase family protein	-
K7I17_RS13355 (K7I17_13355)	cymR	2589822..2590238 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
K7I17_RS13360 (K7I17_13360)	rarA	2590433..2591701 (+)	1269	WP_013353023.1	replication-associated recombination protein A	Machinery gene
K7I17_RS13365 (K7I17_13365)	-	2591819..2592583 (-)	765	WP_013353024.1	ThiF family adenylyltransferase	-
K7I17_RS13375 (K7I17_13375)	aspS	2592910..2594688 (-)	1779	WP_013353025.1	aspartate--tRNA ligase	-
K7I17_RS13380 (K7I17_13380)	hisS	2594703..2595977 (-)	1275	WP_013353026.1	histidine--tRNA ligase	-
K7I17_RS13385 (K7I17_13385)	-	2596357..2596527 (-)	171	WP_014470770.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46685.56 Da
• Isoelectric Point: 8.2451

>NTDB_id=527907 K7I17_RS13360 WP_013353023.1 2590433..2591701(+) (rarA) [Bacillus amyloliquefaciens strain Bam1]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALRR
ALTDEHRGLGSYSVSVDDEAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRSGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPEPLKNKQYYKP
KQTGKFEAAIKQVYEKLLKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=527907 K7I17_RS13360 WP_013353023.1 2590433..2591701(+) (rarA) [Bacillus amyloliquefaciens strain Bam1]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGCGCAAAGCACCTATCATCCATGATCCTGTACGGACCGCCAGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGAAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAA
ATTGTCGTACAGGAAGCGAAAATGTCAGGTCAGGTCATCTTAATACTTGATGAAGTGCACAGGCTTGATAAGGGGAAGCA
GGATTTTCTCCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTCGAACTCGAACCGTTAACACCGGATCTGATCAAGCAGGCATTGAGAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGAAGCGATGGATCATTTCGCGCAAGG
GTGTGGAGGAGACGTCCGTTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTTTCCACAAAGGAATCAAGTGACGGCACGA
TCCGCATTACGCGGGAAACAGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAGACGGAGATGCGCATTAT
GACGTCTTATCCGCATTCCAAAAATCAATCCGCGGCTCAGACGCAAACGCCGCACTTCATTATTTAGCCCGACTGATCGA
AGCCGGCGATCTTGAAAGCATTTCAAGAAGACTTCTCGTAATCGCCTATGAAGATATCGGCCTTGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAGCGGATCGGCTTTCCCGAAGCGAGAATTCCGCTGGCGAATGCGGTA
ATCGAATTATGCCTTTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAAGCGCTCAAAGATATCAGATCGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGAGCCCAAGAGCTCGGACGCGGAATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCTGAACCGTTAAAAAACAAACAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGCTGAAACAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

3D structure

• AlphaFold DB: A0A9P1NII9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905