Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6I51_RS12820 Genome accession   NZ_CP068187
Coordinates   2519199..2520332 (-) Length   377 a.a.
NCBI ID   WP_201702175.1    Uniprot ID   A0AA42MQI1
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2514199..2525332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS12790 (I6I51_12795) - 2514408..2514998 (-) 591 WP_201702162.1 hypothetical protein -
  I6I51_RS12795 (I6I51_12800) - 2515131..2515505 (-) 375 WP_201702164.1 RcnB family protein -
  I6I51_RS12800 (I6I51_12805) - 2515705..2516250 (-) 546 WP_004984048.1 glutathione peroxidase -
  I6I51_RS12805 (I6I51_12810) - 2516374..2516928 (-) 555 WP_087013940.1 hypothetical protein -
  I6I51_RS12810 (I6I51_12815) - 2517264..2518184 (+) 921 WP_201702166.1 DMT family transporter -
  I6I51_RS12815 (I6I51_12820) - 2518584..2519153 (-) 570 WP_010325660.1 L-threonylcarbamoyladenylate synthase -
  I6I51_RS12820 (I6I51_12825) dprA 2519199..2520332 (-) 1134 WP_201702175.1 DNA-processing protein DprA Machinery gene
  I6I51_RS12825 (I6I51_12830) tsaP 2520355..2521509 (-) 1155 WP_125281524.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6I51_RS12830 (I6I51_12835) def 2521630..2522163 (+) 534 WP_201702181.1 peptide deformylase -
  I6I51_RS12835 (I6I51_12840) - 2522254..2522691 (+) 438 WP_078389804.1 DUF2946 family protein -
  I6I51_RS12840 (I6I51_12845) - 2522763..2523254 (+) 492 Protein_2449 TonB-dependent receptor plug domain-containing protein -
  I6I51_RS12845 (I6I51_12850) - 2523949..2523950 (-) 2 WP_125625403.1 IS4-like element ISAba33 family transposase -
  I6I51_RS12850 (I6I51_12855) - 2524524..2524862 (-) 339 Protein_2451 transposase family protein -
  I6I51_RS12855 (I6I51_12860) - 2524900..2525304 (-) 405 WP_008942454.1 transposase family protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41647.22 Da        Isoelectric Point: 6.5882

>NTDB_id=527907 I6I51_RS12820 WP_201702175.1 2519199..2520332(-) (dprA) [Acinetobacter johnsonii strain FDAARGOS_1094]
MLNSLSHEQIATITLWYLVQHSLSSFQKLQQHFGTSTKAVAASNLQIWPNLGLHKSHLQRVIEIQTSAGQTKLQTLLHDV
QASCDFILLDTESHYPSQLLPYSDRPPILFGQGNPQSLLQPQVAIVGSRKPSPHGKQVAYDFAYYLAEKGFYICSGLAEG
IDAAAHQGGLKYQRTIAVMGTGLDLTYPSQHQALRTQILENNGCIITEFLPHTPPLQHNFPRRNRIVSALSLGVVVAEAA
LKSGSLGTAKSAAEQGKTIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQIIEDLALPTQWHSQSQSQETTPSASIEIPS
DLLELYNQLDWVGQNMDQLNFKLNIDIATLTSQLMELEILGLAQQQAGNYLRCRSSQ

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=527907 I6I51_RS12820 WP_201702175.1 2519199..2520332(-) (dprA) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGCTGAACTCTTTATCACATGAACAGATTGCAACAATCACCCTGTGGTATTTAGTTCAGCATTCTTTATCAAGCTTTCA
AAAACTACAACAACATTTTGGCACAAGCACAAAAGCCGTTGCTGCCTCCAATCTTCAGATCTGGCCAAATCTCGGCTTAC
ACAAAAGTCATCTACAACGTGTCATAGAAATTCAAACATCTGCTGGCCAAACCAAATTACAAACTTTACTGCATGACGTC
CAAGCCAGTTGTGATTTTATTTTGCTTGATACTGAAAGTCATTATCCCTCGCAACTGCTGCCCTATTCTGACCGGCCACC
GATTTTATTTGGTCAGGGTAATCCACAAAGCCTATTACAACCTCAAGTTGCTATCGTTGGCAGTCGAAAACCCAGTCCAC
ACGGCAAACAAGTGGCTTATGACTTTGCCTATTACCTCGCCGAAAAGGGCTTTTATATTTGCAGTGGTTTGGCTGAAGGC
ATTGATGCAGCGGCACATCAGGGCGGCTTAAAATATCAACGTACCATTGCAGTGATGGGCACGGGCTTAGATCTCACTTA
CCCATCCCAACATCAAGCCCTGCGTACGCAAATATTAGAAAATAATGGCTGTATCATTACTGAATTTTTACCACATACAC
CGCCTTTACAGCATAATTTTCCACGGCGCAACCGCATCGTCAGTGCATTGAGTTTAGGGGTTGTGGTTGCAGAAGCCGCA
CTCAAAAGTGGCTCTCTTGGTACAGCCAAATCTGCTGCTGAACAAGGGAAAACCATTTTTGCGATTCCCGGTCATATTTA
CAGCGAACACCATCAAGGTTGTCATCAACTGATCCGAGAAGGGGCGATTTTGGTCGATCATCCTGAGCAAATCATTGAAG
ACTTGGCACTCCCCACTCAATGGCATAGCCAATCCCAGTCACAAGAAACCACCCCAAGTGCTAGTATTGAGATCCCATCT
GATTTACTCGAACTTTATAATCAACTGGATTGGGTTGGACAAAATATGGATCAACTTAATTTCAAACTTAACATCGATAT
TGCCACACTCACTAGCCAGTTAATGGAACTGGAGATTTTAGGACTCGCACAACAACAGGCTGGCAATTATCTGCGTTGCC
GTTCCAGCCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(90-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.489

99.735

0.663
  dprA Acinetobacter baumannii D1279779

65.691

99.735

0.655
  dprA Acinetobacter baylyi ADP1

61.155

100

0.618