Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I6I52_RS15730 Genome accession   NZ_CP068180
Coordinates   3369097..3370227 (+) Length   376 a.a.
NCBI ID   WP_004985578.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain FDAARGOS_1095     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3364097..3375227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I52_RS15705 (I6I52_15705) - 3364326..3364583 (-) 258 WP_004985566.1 hypothetical protein -
  I6I52_RS15710 (I6I52_15710) - 3364627..3366669 (-) 2043 WP_004985567.1 TonB-dependent copper receptor -
  I6I52_RS15715 (I6I52_15715) - 3366771..3367202 (-) 432 WP_370685012.1 DUF2946 family protein -
  I6I52_RS15720 (I6I52_15720) def 3367288..3367812 (-) 525 WP_004985572.1 peptide deformylase -
  I6I52_RS15725 (I6I52_15725) tsaP 3367934..3369085 (+) 1152 WP_004985575.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6I52_RS15730 (I6I52_15730) dprA 3369097..3370227 (+) 1131 WP_004985578.1 DNA-processing protein DprA Machinery gene
  I6I52_RS15735 (I6I52_15735) - 3370270..3370842 (+) 573 WP_004985579.1 L-threonylcarbamoyladenylate synthase -
  I6I52_RS15740 (I6I52_15740) - 3371336..3372253 (-) 918 WP_004985582.1 ABC transporter permease -
  I6I52_RS15745 (I6I52_15745) - 3372263..3373369 (-) 1107 WP_004985584.1 ABC transporter permease -
  I6I52_RS15750 (I6I52_15750) - 3373397..3375007 (-) 1611 WP_004985586.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 42232.77 Da        Isoelectric Point: 6.5377

>NTDB_id=527876 I6I52_RS15730 WP_004985578.1 3369097..3370227(+) (dprA) [Acinetobacter ursingii strain FDAARGOS_1095]
MLNNLNPHHYHTIAVWYLVQHSLSAFQKIKHHFGDCEQAMLPQHLAQWSQLGLHASHLKRVQEYQSDAGQQDFARLINLV
KQYTDFIVTPDDTLYPSQLLPYEDRPPIIFGQGKVDALLQPQIAIVGSRKPSPHGRQVAYDFAFYLSEKGFFVSSGLAHG
IDEAAHQGGLQHQRSIAVMGTGLDTTYPTANQDLRQQIAQQGAVISEFLPQTLPLQRHFPRRNRIVSGLSLGVLVVEAKQ
QSGSLITANEAAKQGKLIFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQINQQVQPDSTEQTHHIPEH
LIGLYQQLDWIGQSIDQLAQNFTGSTAELTGQLMELELSGLCMQQAGLYQRCRPNY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=527876 I6I52_RS15730 WP_004985578.1 3369097..3370227(+) (dprA) [Acinetobacter ursingii strain FDAARGOS_1095]
ATGCTAAACAATTTGAATCCTCATCACTACCACACCATTGCGGTGTGGTATCTGGTGCAACATTCTCTTTCTGCATTTCA
AAAAATCAAACATCATTTTGGTGATTGTGAACAAGCCATGTTGCCCCAACATTTGGCGCAGTGGTCACAGTTGGGCTTAC
ATGCCAGTCATCTGAAACGTGTTCAAGAATATCAAAGCGATGCTGGTCAACAGGATTTTGCTAGACTGATTAATTTGGTA
AAACAGTACACCGATTTTATTGTTACACCCGATGATACACTATACCCATCGCAACTGCTTCCTTATGAAGATCGCCCACC
GATTATTTTTGGGCAGGGTAAAGTTGATGCCTTACTACAACCACAAATTGCAATTGTAGGTAGCCGCAAACCTAGTCCAC
ATGGTCGACAGGTCGCTTATGATTTTGCTTTTTATTTAAGTGAAAAAGGCTTCTTTGTTAGTAGCGGTCTGGCACATGGG
ATTGATGAAGCAGCACATCAGGGTGGTTTACAGCATCAGCGTAGTATCGCGGTCATGGGTACGGGTCTGGATACGACTTA
TCCGACAGCCAATCAAGATTTACGCCAACAAATAGCACAACAAGGTGCAGTCATTAGTGAATTTTTACCGCAAACCTTGC
CCTTACAACGTCATTTTCCACGGCGTAACCGAATCGTGAGTGGCTTAAGTCTGGGAGTACTGGTGGTTGAAGCCAAACAG
CAAAGCGGCTCATTAATCACCGCCAATGAAGCAGCCAAACAAGGCAAACTCATTTTTGCGATTCCAGGGCATATTTATAG
CGAATTTCATCAAGGTTGCCATCAACTGATTCGGGAAGGTGCAATTTTGGTTGATCATCCTGAACAGATCATTGAAGATT
TAGCGCTGCCAACACAATGGCAAATCAATCAGCAAGTGCAACCTGACTCAACTGAGCAAACTCATCATATCCCAGAGCAT
TTAATTGGCTTATATCAACAACTGGATTGGATCGGACAAAGTATCGATCAACTCGCTCAAAACTTTACTGGATCAACTGC
CGAATTAACTGGTCAATTGATGGAACTTGAACTCTCGGGACTATGTATGCAACAGGCTGGTTTATATCAACGTTGCCGAC
CAAACTATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

71.733

99.734

0.715

  dprA Acinetobacter baumannii D1279779

71.733

99.734

0.715

  dprA Acinetobacter baylyi ADP1

66.841

100

0.681