Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I6I53_RS05925 Genome accession   NZ_CP068176
Coordinates   1146533..1147663 (-) Length   376 a.a.
NCBI ID   WP_004995422.1    Uniprot ID   A0A7T9UKE8
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1141533..1152663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS05905 (I6I53_05910) - 1141754..1143364 (+) 1611 WP_004995431.1 ABC transporter ATP-binding protein -
  I6I53_RS05910 (I6I53_05915) - 1143392..1144498 (+) 1107 WP_004995428.1 ABC transporter permease -
  I6I53_RS05915 (I6I53_05920) - 1144508..1145425 (+) 918 WP_004995427.1 ABC transporter permease -
  I6I53_RS05920 (I6I53_05925) - 1145918..1146490 (-) 573 WP_004995425.1 L-threonylcarbamoyladenylate synthase -
  I6I53_RS05925 (I6I53_05930) dprA 1146533..1147663 (-) 1131 WP_004995422.1 DNA-processing protein DprA Machinery gene
  I6I53_RS05930 (I6I53_05935) tsaP 1147675..1148826 (-) 1152 WP_004995419.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6I53_RS05935 (I6I53_05940) def 1148948..1149472 (+) 525 WP_004985572.1 peptide deformylase -
  I6I53_RS05940 (I6I53_05945) - 1149558..1149989 (+) 432 WP_373866500.1 DUF2946 family protein -
  I6I53_RS05945 (I6I53_05950) - 1150091..1152133 (+) 2043 WP_004995413.1 TonB-dependent copper receptor -
  I6I53_RS05950 (I6I53_05955) - 1152177..1152434 (+) 258 WP_004985566.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 42291.91 Da        Isoelectric Point: 6.5740

>NTDB_id=527818 I6I53_RS05925 WP_004995422.1 1146533..1147663(-) (dprA) [Acinetobacter ursingii strain FDAARGOS_1096]
MLNNLNPHHYHTIAVWYLVQHSLSAFQKIKHHFGDCEQAMLPQHLAQWSQLGLHASHLKRVQEYQSDAGQQVFARLINLV
KQYTDFIVTPDDTLYPSQLLPYEDRPPIIFGQGKVDALLQPQIAIVGSRKPSPHGRQVAYDFAFYLSEKGFFVSSGLAHG
IDEAAHQGGLQHQRSIAVMGTGLDTTYPTANQDLRQQIAQQGAVISEFLPQTLPLQRHFPRRNRIVSGLSLGVLVVEAKQ
QSGSLITANEAAKQGKLIFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWHINQQVQPDSTEQTHHIPEH
LIDLYQQLDWIGQSIDQLAQNFTGSTAELTGQLMELELLGLCLQQAGLYQRCRPNY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=527818 I6I53_RS05925 WP_004995422.1 1146533..1147663(-) (dprA) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGCTAAACAATTTGAATCCTCATCACTACCACACCATTGCGGTGTGGTATCTGGTGCAACATTCTCTTTCTGCATTTCA
AAAAATCAAACATCATTTTGGTGATTGTGAACAAGCCATGTTGCCCCAACATTTGGCGCAGTGGTCACAGTTGGGCTTAC
ATGCCAGTCATCTGAAACGTGTTCAAGAATATCAAAGCGATGCTGGACAACAGGTTTTTGCCAGACTGATTAATTTGGTA
AAACAGTACACCGATTTTATTGTTACACCCGATGATACGCTATATCCATCGCAACTGCTTCCTTATGAAGATCGCCCACC
GATTATTTTTGGGCAGGGTAAAGTTGATGCCTTACTACAACCGCAAATTGCAATTGTGGGAAGTCGAAAACCTAGTCCAC
ATGGTCGACAGGTGGCTTATGATTTTGCTTTTTATTTAAGTGAAAAAGGCTTCTTTGTTAGTAGCGGTCTGGCACATGGG
ATTGATGAAGCAGCACATCAGGGTGGTTTACAGCATCAGCGTAGTATCGCGGTCATGGGTACTGGTCTGGATACGACTTA
TCCGACAGCCAATCAAGATTTACGCCAACAAATAGCACAACAAGGCGCAGTCATTAGTGAATTTTTACCGCAAACCTTGC
CCTTACAACGTCATTTTCCACGGCGTAACCGAATCGTGAGTGGCTTAAGTCTGGGAGTACTGGTGGTTGAAGCCAAACAG
CAAAGCGGCTCATTAATCACTGCCAATGAAGCAGCCAAACAAGGCAAACTCATTTTTGCGATTCCAGGTCATATTTATAG
CGAATTTCATCAAGGTTGCCATCAACTGATTCGGGAAGGTGCAATTTTGGTTGATCATCCTGAACAGATCATTGAAGATT
TAGCGCTGCCAACACAATGGCACATCAATCAGCAAGTGCAACCTGACTCAACTGAGCAAACTCATCATATCCCAGAGCAT
TTAATTGACTTATATCAACAACTGGACTGGATCGGACAAAGTATCGATCAACTCGCTCAAAACTTTACTGGATCAACTGC
CGAATTAACTGGTCAATTGATGGAACTGGAACTCTTAGGTCTATGTCTCCAGCAAGCAGGTTTATATCAACGTTGCCGAC
CAAACTATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

71.733

99.734

0.715

  dprA Acinetobacter baumannii D1279779

71.733

99.734

0.715

  dprA Acinetobacter baylyi ADP1

67.363

100

0.686