Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I53_RS03990 Genome accession   NZ_CP068176
Coordinates   735534..736097 (-) Length   187 a.a.
NCBI ID   WP_004994472.1    Uniprot ID   A0A7T9Z7G6
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 730534..741097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS03970 (I6I53_03975) - 730674..731747 (-) 1074 WP_201686714.1 DNA/RNA non-specific endonuclease -
  I6I53_RS03975 (I6I53_03980) - 732007..732444 (+) 438 WP_004994468.1 hypothetical protein -
  I6I53_RS03980 (I6I53_03985) - 732513..734393 (-) 1881 WP_004991903.1 potassium transporter Kup -
  I6I53_RS03990 (I6I53_03995) ssb 735534..736097 (-) 564 WP_004994472.1 single-stranded DNA-binding protein Machinery gene
  I6I53_RS03995 (I6I53_04000) - 736149..737513 (-) 1365 WP_035253941.1 MFS transporter -
  I6I53_RS04000 (I6I53_04005) - 737657..738736 (-) 1080 WP_004994476.1 DUF475 domain-containing protein -
  I6I53_RS04005 (I6I53_04010) tenA 738931..739602 (+) 672 WP_004994477.1 thiaminase II -
  I6I53_RS04010 (I6I53_04015) - 739667..739951 (-) 285 WP_004992008.1 YciI family protein -
  I6I53_RS04015 (I6I53_04020) - 739972..740316 (-) 345 WP_004992011.1 GlpM family protein -
  I6I53_RS04020 (I6I53_04025) - 740523..740897 (+) 375 WP_004992014.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20574.34 Da        Isoelectric Point: 6.4820

>NTDB_id=527815 I6I53_RS03990 WP_004994472.1 735534..736097(-) (ssb) [Acinetobacter ursingii strain FDAARGOS_1096]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSRQQGDQAMGGGNDFNQPRFNNAPQQSGYGQSNGSNQGNYANNFSGGYGNA
GNNNPGGFAPKAPAAPAPSDLDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=527815 I6I53_RS03990 WP_004994472.1 735534..736097(-) (ssb) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGCGTGGTGTGAATAAAGTTATTTTAGTTGGTACTTTAGGACGTGATCCAGAAACCAAAACTTTTCCAAATGGTGGTTC
ACTGACTCAGTTTTCAATTGCGACCAGTGAATCGTGGACAGATAAAAATACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ATCGTATTGTCTTGCATAATCGTTTAGGGGAAATTGCACAGCAATATTTGCGTAAAGGATCAAAAGTTTATATTGAAGGT
TCTTTGCGTACTCGCCAGTGGACGGATCAAAACGGACAGGAACGCTATACCACTGAAATTCGTGGTGAGCAAATGCAGAT
GTTGGATTCTCGTCAGCAAGGGGATCAGGCAATGGGCGGTGGCAATGATTTTAATCAGCCACGTTTTAATAATGCTCCAC
AACAGTCTGGCTATGGTCAAAGTAATGGCTCTAATCAGGGTAACTATGCCAATAATTTTTCTGGCGGTTATGGCAATGCG
GGCAACAATAATCCAGGCGGTTTTGCGCCAAAAGCACCTGCTGCACCAGCGCCTTCTGATTTGGATGATGATTTACCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T9Z7G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.567
  ssb Vibrio cholerae strain A1552

45.596

100

0.471
  ssb Neisseria meningitidis MC58

40.107

100

0.401
  ssb Neisseria gonorrhoeae MS11

40.107

100

0.401