Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6I37_RS14400 Genome accession   NZ_CP068150
Coordinates   2828190..2828669 (+) Length   159 a.a.
NCBI ID   WP_026747229.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FDAARGOS_1080     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2823190..2833669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I37_RS14340 (I6I37_14340) - 2823283..2823471 (+) 189 WP_026747222.1 gp45 family putative tail fiber system protein -
  I6I37_RS14345 (I6I37_14345) - 2823707..2823895 (+) 189 WP_226320582.1 hypothetical protein -
  I6I37_RS14350 (I6I37_14350) - 2823892..2824773 (+) 882 WP_003753535.1 hypothetical protein -
  I6I37_RS14355 (I6I37_14355) - 2824727..2825539 (+) 813 WP_026747224.1 PD-(D/E)XK nuclease-like domain-containing protein -
  I6I37_RS15120 - 2825558..2826454 (+) 897 WP_049948769.1 Lin1244/Lin1753 domain-containing protein -
  I6I37_RS14370 (I6I37_14370) - 2826451..2826915 (+) 465 WP_026747225.1 class I SAM-dependent methyltransferase -
  I6I37_RS14375 (I6I37_14375) - 2826912..2827082 (+) 171 WP_176747895.1 hypothetical protein -
  I6I37_RS14380 (I6I37_14380) - 2827129..2827392 (+) 264 WP_049948770.1 DUF1642 domain-containing protein -
  I6I37_RS14385 (I6I37_14385) - 2827389..2827772 (+) 384 WP_026747226.1 YopX family protein -
  I6I37_RS14390 (I6I37_14390) - 2827769..2827984 (+) 216 WP_026747227.1 hypothetical protein -
  I6I37_RS14395 (I6I37_14395) - 2827981..2828190 (+) 210 WP_026747228.1 hypothetical protein -
  I6I37_RS14400 (I6I37_14400) ssbA 2828190..2828669 (+) 480 WP_026747229.1 single-stranded DNA-binding protein Machinery gene
  I6I37_RS14405 (I6I37_14405) - 2828691..2829068 (+) 378 WP_012951948.1 hypothetical protein -
  I6I37_RS14410 (I6I37_14410) - 2829096..2829278 (+) 183 WP_031668357.1 hypothetical protein -
  I6I37_RS14415 (I6I37_14415) - 2829223..2829627 (+) 405 WP_026747230.1 DUF1064 domain-containing protein -
  I6I37_RS14420 (I6I37_14420) - 2829631..2830014 (+) 384 WP_026747231.1 DUF2481 family protein -
  I6I37_RS14425 (I6I37_14425) - 2830143..2830307 (+) 165 WP_015967177.1 hypothetical protein -
  I6I37_RS14430 (I6I37_14430) - 2830326..2830760 (+) 435 WP_026747232.1 ArpU family phage packaging/lysis transcriptional regulator -
  I6I37_RS14435 (I6I37_14435) - 2831034..2831267 (+) 234 WP_026747233.1 hypothetical protein -
  I6I37_RS14440 (I6I37_14440) - 2831302..2832168 (+) 867 WP_026747234.1 terminase small subunit -
  I6I37_RS14445 (I6I37_14445) - 2832107..2833426 (+) 1320 WP_026747235.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17690.47 Da        Isoelectric Point: 5.2612

>NTDB_id=527635 I6I37_RS14400 WP_026747229.1 2828190..2828669(+) (ssbA) [Listeria monocytogenes strain FDAARGOS_1080]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRTFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAESVQFLEPRNHAEGTTSNNYQNQVSYSNNSQTSSYRADTSQKSDSFANEGKPIDINPDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=527635 I6I37_RS14400 WP_026747229.1 2828190..2828669(+) (ssbA) [Listeria monocytogenes strain FDAARGOS_1080]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGATCCGGATTTACGTTACACTCCAGCGGGCGCGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGTACATTCACTAATCAGAACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTT
GGCGTAAACCTGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGCGTACAGACTCGT
AATTATGAGGACAGCGACGGTAAACGTGTTTTCGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCCAGAAA
CCACGCAGAAGGCACTACATCGAATAATTATCAAAACCAAGTTAGTTATTCAAATAACAGCCAAACAAGCTCATATCGAG
CGGATACGAGCCAGAAGAGCGATTCGTTTGCGAATGAAGGTAAGCCGATTGATATTAATCCGGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.698

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

66.667

0.421
  ssb Glaesserella parasuis strain SC1401

32.222

100

0.365