NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	BAJP3042_RS13235	Genome accession	NZ_CP082243
Coordinates	2735358..2736053 (-)	Length	231 a.a.
NCBI ID	WP_007408165.1	Uniprot ID	A7Z793
Organism	Bacillus amyloliquefaciens strain JP3042
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2730358..2741053

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAJP3042_RS13205 (BAJP3042_13205)	-	2730374..2731177 (-)	804	WP_007408168.1	M23 family metallopeptidase	-
BAJP3042_RS13210 (BAJP3042_13210)	minD	2731304..2732107 (-)	804	WP_016938784.1	septum site-determining protein MinD	-
BAJP3042_RS13215 (BAJP3042_13215)	minC	2732110..2732790 (-)	681	WP_003152653.1	septum site-determining protein MinC	-
BAJP3042_RS13220 (BAJP3042_13220)	mreD	2732844..2733362 (-)	519	WP_007408167.1	rod shape-determining protein MreD	-
BAJP3042_RS13225 (BAJP3042_13225)	mreC	2733359..2734222 (-)	864	WP_007408166.1	rod shape-determining protein MreC	-
BAJP3042_RS13230 (BAJP3042_13230)	mreB	2734253..2735266 (-)	1014	WP_003152647.1	cell shape-determining protein MreB	-
BAJP3042_RS13235 (BAJP3042_13235)	ysxA/radC	2735358..2736053 (-)	696	WP_007408165.1	DNA repair protein RadC	Machinery gene
BAJP3042_RS13240 (BAJP3042_13240)	-	2736085..2736654 (-)	570	WP_007408164.1	nucleoside triphosphate pyrophosphatase	-
BAJP3042_RS13245 (BAJP3042_13245)	-	2736795..2737796 (-)	1002	WP_138092704.1	SPOR domain-containing protein	-
BAJP3042_RS13250 (BAJP3042_13250)	comC	2737923..2738675 (-)	753	WP_222835222.1	A24 family peptidase	Machinery gene
BAJP3042_RS13255 (BAJP3042_13255)	-	2738815..2740107 (-)	1293	WP_222835223.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

Download Length: 231 a.a. Molecular weight: 26080.30 Da Isoelectric Point: 9.1909

                                >NTDB_id=527613 BAJP3042_RS13235 WP_007408165.1 2735358..2736053(-) (ysxA/radC) [Bacillus amyloliquefaciens strain JP3042]

MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG

IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH

PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide

Download Length: 696 bp

                                >NTDB_id=527613 BAJP3042_RS13235 WP_007408165.1 2735358..2736053(-) (ysxA/radC) [Bacillus amyloliquefaciens strain JP3042]

TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG

AGCCGAACATCTGTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG

CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA

ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA

TTGCGTCATCCGCTCTCCGGAAGACGGAGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT

GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC

CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGTGTTCACAATCATCCTTCAGGAGATCC

TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC

ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	87.879	100	0.879
radC	Streptococcus pneumoniae TIGR4	49.524	90.909	0.45
radC	Streptococcus pneumoniae R6	49.048	90.909	0.446
radC	Streptococcus pneumoniae D39	49.048	90.909	0.446
radC	Streptococcus gordonii str. Challis substr. CH1	47.143	90.909	0.429

Detailed information NTG0527613