Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I38_RS01570 Genome accession   NZ_CP068148
Coordinates   338821..339357 (+) Length   178 a.a.
NCBI ID   WP_020837150.1    Uniprot ID   -
Organism   Serratia liquefaciens strain FDAARGOS_1081     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 333821..344357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I38_RS01555 (I6I38_01555) maa 333843..334400 (+) 558 WP_142816292.1 maltose O-acetyltransferase -
  I6I38_RS01560 (I6I38_01560) - 334435..335487 (-) 1053 WP_044553778.1 NAD(P)-dependent alcohol dehydrogenase -
  I6I38_RS01565 (I6I38_01565) uvrA 335712..338543 (-) 2832 WP_020837151.1 excinuclease ABC subunit UvrA -
  I6I38_RS01570 (I6I38_01570) ssb 338821..339357 (+) 537 WP_020837150.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6I38_RS01575 (I6I38_01575) - 339419..340168 (-) 750 WP_046372533.1 3-oxoacyl-ACP reductase family protein -
  I6I38_RS01580 (I6I38_01580) - 340297..341214 (+) 918 WP_201895961.1 LysR family transcriptional regulator -
  I6I38_RS01585 (I6I38_01585) bhsA 341271..341531 (-) 261 WP_020837147.1 multiple stress resistance protein BhsA -
  I6I38_RS01590 (I6I38_01590) - 341763..342431 (+) 669 WP_128864510.1 glutathione S-transferase family protein -
  I6I38_RS01595 (I6I38_01595) - 342479..342886 (+) 408 WP_020837145.1 VOC family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18746.73 Da        Isoelectric Point: 5.2456

>NTDB_id=527580 I6I38_RS01570 WP_020837150.1 338821..339357(+) (ssb) [Serratia liquefaciens strain FDAARGOS_1081]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQASGGQGGWGQPQQPQGGNQFSGGQQARPAQNNA
PAASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=527580 I6I38_RS01570 WP_020837150.1 338821..339357(+) (ssb) [Serratia liquefaciens strain FDAARGOS_1081]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGTGCAGTGGCCAACATTACGCTGGCAACCTCCGAAAGCTGGCGTGACAAGGCGACTGGCGAGCAGAAAGAAAAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCTGAAGTGGCGGGCGAATATCTGCGTAAAGGTTCCCAGGTGTACATC
GAGGGCGCGCTGCAGACTCGCAAATGGACCGATCAGGCTGGCGTAGAAAAATACACCACCGAAGTTGTGGTTAACGTTGG
TGGCACCATGCAGATGCTGGGCGGCCGTCAAGGCGGTGGCGCACCGGCAGGCGGTGGTCAGGCTTCCGGCGGCCAGGGCG
GTTGGGGTCAACCTCAGCAGCCACAAGGCGGCAACCAGTTCAGCGGTGGCCAGCAGGCGCGCCCGGCGCAGAACAACGCA
CCGGCAGCCAGCAGCAATGAACCGCCAATGGACTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.753
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.584
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.478
  ssb Neisseria meningitidis MC58

45.213

100

0.478