Detailed information NTG0527520

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BAJP3042_RS01565
• Genome accession: NZ_CP082243
• Coordinates: 316149..317270 (+)
• Length: 373 a.a.
• NCBI ID: WP_063096115.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP3042
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 311149..322270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAJP3042_RS01545 (BAJP3042_01545)	-	311458..312453 (-)	996	WP_222835621.1	DUF5105 domain-containing protein	-
BAJP3042_RS01550 (BAJP3042_01550)	-	312580..313980 (+)	1401	WP_222836080.1	YcdB/YcdC domain-containing protein	-
BAJP3042_RS01555 (BAJP3042_01555)	-	314181..315539 (+)	1359	WP_222835622.1	YcdB/YcdC domain-containing protein	-
BAJP3042_RS01560 (BAJP3042_01560)	-	315536..316039 (-)	504	WP_011996280.1	M15 family metallopeptidase	-
BAJP3042_RS01565 (BAJP3042_01565)	rapF	316149..317270 (+)	1122	WP_063096115.1	tetratricopeptide repeat protein	Regulator
BAJP3042_RS01570 (BAJP3042_01570)	-	317386..318165 (+)	780	WP_039252868.1	glucose 1-dehydrogenase	-
BAJP3042_RS01575 (BAJP3042_01575)	-	318249..319928 (+)	1680	WP_222835623.1	alpha-glucosidase	-
BAJP3042_RS01580 (BAJP3042_01580)	-	320113..321072 (+)	960	WP_222835624.1	metal ABC transporter substrate-binding protein	-
BAJP3042_RS01585 (BAJP3042_01585)	-	321127..321822 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44349.53 Da
• Isoelectric Point: 5.0806

>NTDB_id=527520 BAJP3042_RS01565 WP_063096115.1 316149..317270(+) (rapF) [Bacillus amyloliquefaciens strain JP3042]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDYCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=527520 BAJP3042_RS01565 WP_063096115.1 316149..317270(+) (rapF) [Bacillus amyloliquefaciens strain JP3042]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTATTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.857	99.464	0.426
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402