Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   I6I87_RS08780 Genome accession   NZ_CP068109
Coordinates   1942508..1943560 (-) Length   350 a.a.
NCBI ID   WP_201664573.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937508..1948560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS08755 (I6I87_08755) - 1937546..1938082 (-) 537 WP_160002372.1 shikimate kinase -
  I6I87_RS08760 (I6I87_08760) pilQ 1938190..1940526 (-) 2337 WP_201664568.1 type IV pilus secretin family protein -
  I6I87_RS08765 (I6I87_08765) - 1940544..1941086 (-) 543 WP_201664569.1 pilus assembly protein PilP -
  I6I87_RS08770 (I6I87_08770) - 1941076..1941834 (-) 759 WP_198510467.1 type 4a pilus biogenesis protein PilO -
  I6I87_RS08775 (I6I87_08775) - 1941837..1942508 (-) 672 WP_201664571.1 PilN domain-containing protein -
  I6I87_RS08780 (I6I87_08780) pilM 1942508..1943560 (-) 1053 WP_201664573.1 pilus assembly protein PilM Machinery gene
  I6I87_RS08785 (I6I87_08785) - 1943762..1946488 (+) 2727 WP_201664575.1 penicillin-binding protein 1A -
  I6I87_RS08790 (I6I87_08790) - 1946564..1947082 (-) 519 WP_096488583.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38274.64 Da        Isoelectric Point: 4.5253

>NTDB_id=527169 I6I87_RS08780 WP_201664573.1 1942508..1943560(-) (pilM) [Moraxella osloensis strain FDAARGOS_1130]
MRLFTKNNKLVVGVDITTTAIKMVEITRQQGLFHLRNYGIEPLPRGAVVDKNIVDIEAVSDALARLSRGSGFSSKHIATA
VSGSSVISKIIEMEADLTELERESLIRLDADQYIPYPLSEVNLDFEVIGPSATPDMCKVLLVASRTENVDQRVDAGALAG
LDTKIVDVEAYAVERAFQLMVDSLPGQPQHIALIDIGHSQTTLYIAKDGEFVYSREQLFGGAQLTESIQNRYGLTFEEAM
INKRSLSLPDDYYTDVLLPFLDAIVQQITRSLQFYFSSSQNSQVEYILLGGGSASIAGLASMVEQKLGTRTGIANAFSNM
TINNHINTELLIMDAPSLIAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=527169 I6I87_RS08780 WP_201664573.1 1942508..1943560(-) (pilM) [Moraxella osloensis strain FDAARGOS_1130]
GTGAGGTTATTTACAAAAAACAACAAGCTAGTCGTTGGGGTAGATATCACTACCACTGCGATAAAAATGGTTGAAATAAC
ACGGCAGCAAGGTCTATTTCATTTAAGAAATTACGGCATTGAACCGTTACCCCGCGGTGCAGTTGTTGATAAAAATATTG
TAGATATTGAAGCGGTCAGTGACGCCCTCGCAAGATTATCCCGTGGTAGCGGTTTTTCTAGTAAACATATCGCGACAGCC
GTATCAGGGTCTTCGGTTATTAGCAAAATTATTGAGATGGAAGCGGATCTCACAGAGCTTGAACGAGAATCCCTTATACG
TCTAGATGCTGACCAATATATTCCCTATCCTTTATCAGAAGTTAATTTAGATTTTGAAGTGATAGGTCCTTCAGCCACGC
CTGATATGTGTAAGGTATTGTTGGTTGCCTCTCGCACTGAAAATGTCGACCAACGTGTCGATGCGGGTGCTTTGGCGGGA
CTGGATACTAAAATTGTGGATGTAGAGGCTTACGCAGTTGAACGTGCCTTTCAATTAATGGTCGATAGCTTGCCAGGTCA
ACCTCAGCATATAGCCCTTATTGATATCGGGCACAGCCAAACCACGCTTTATATTGCAAAGGACGGGGAGTTTGTATACA
GCCGTGAACAGCTTTTTGGTGGCGCCCAGTTAACTGAAAGTATTCAAAATCGTTATGGTTTGACGTTTGAGGAGGCGATG
ATTAATAAGCGCAGCTTGTCATTGCCAGATGATTACTATACGGATGTGTTACTGCCATTTTTAGATGCCATTGTGCAGCA
AATCACCCGCTCGCTGCAGTTTTATTTTTCATCCAGCCAAAATAGCCAAGTAGAGTATATTTTGTTGGGTGGCGGTAGTG
CCAGCATTGCGGGTCTAGCAAGCATGGTTGAACAAAAACTTGGTACCCGCACAGGTATTGCCAATGCATTTTCAAATATG
ACGATTAATAACCATATCAACACTGAATTACTGATTATGGACGCGCCAAGCTTAATAGCAGCTTGTGGCTTGGCGTTACG
GAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.852

100

0.52
  comM Acinetobacter nosocomialis M2

50.997

100

0.511
  comM Acinetobacter baylyi ADP1

48.148

100

0.483
  pilM Legionella pneumophila strain ERS1305867

42.21

100

0.426