Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PCC21_RS17415 Genome accession   NC_018525
Coordinates   3987309..3987854 (+) Length   181 a.a.
NCBI ID   WP_010295128.1    Uniprot ID   A0AAP8X217
Organism   Pectobacterium carotovorum subsp. carotovorum PCC21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3982309..3992854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC21_RS17400 (PCC21_035040) cas6f 3982858..3983412 (+) 555 WP_014916580.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  PCC21_RS17405 (PCC21_035050) - 3983789..3984208 (-) 420 WP_014916581.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PCC21_RS17410 (PCC21_035060) uvrA 3984224..3987058 (-) 2835 WP_014916582.1 excinuclease ABC subunit UvrA -
  PCC21_RS17415 (PCC21_035070) ssb 3987309..3987854 (+) 546 WP_010295128.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PCC21_RS17420 (PCC21_035080) - 3988104..3989930 (+) 1827 WP_014916583.1 amidohydrolase -
  PCC21_RS17425 (PCC21_035090) - 3990144..3990602 (+) 459 WP_014916584.1 GNAT family N-acetyltransferase -
  PCC21_RS17430 (PCC21_035100) - 3990668..3991282 (-) 615 WP_014916585.1 hypothetical protein -
  PCC21_RS17435 (PCC21_035110) - 3991369..3991800 (-) 432 WP_014916586.1 carboxymuconolactone decarboxylase family protein -
  PCC21_RS17440 (PCC21_035120) - 3991940..3992371 (-) 432 WP_014916587.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19172.13 Da        Isoelectric Point: 5.2456

>NTDB_id=52716 PCC21_RS17415 WP_010295128.1 3987309..3987854(+) (ssb) [Pectobacterium carotovorum subsp. carotovorum PCC21]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=52716 PCC21_RS17415 WP_010295128.1 3987309..3987854(+) (ssb) [Pectobacterium carotovorum subsp. carotovorum PCC21]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGCCAGCAAC
AAGGCGGCTGGGGTCAACCTCAACAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGTCCGGCA
CAGAACAGTGCTCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459

Multiple sequence alignment