Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   K6972_RS02440 Genome accession   NZ_CP082203
Coordinates   465183..465848 (+) Length   221 a.a.
NCBI ID   WP_222812798.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460183..470848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS02415 (K6972_02415) - 460394..461794 (+) 1401 WP_222812792.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  K6972_RS02420 (K6972_02420) - 461796..462167 (+) 372 WP_222812793.1 S1 RNA-binding domain-containing protein -
  K6972_RS02425 (K6972_02425) cysK 462193..463119 (-) 927 WP_222812795.1 cysteine synthase A -
  K6972_RS02430 (K6972_02430) - 463209..463841 (-) 633 WP_161947046.1 YigZ family protein -
  K6972_RS02435 (K6972_02435) comFA/cflA 463898..465190 (+) 1293 WP_222812796.1 DEAD/DEAH box helicase Machinery gene
  K6972_RS02440 (K6972_02440) comFC/cflB 465183..465848 (+) 666 WP_222812798.1 ComF family protein Machinery gene
  K6972_RS02445 (K6972_02445) hpf 465925..466467 (+) 543 WP_014637536.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25787.64 Da        Isoelectric Point: 8.4541

>NTDB_id=527129 K6972_RS02440 WP_222812798.1 465183..465848(+) (comFC/cflB) [Streptococcus suis strain NJ3]
MSNCLLCDQAMKNKTRFSDLIFFGKEKSGTCEECFLTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALRQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDGKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=527129 K6972_RS02440 WP_222812798.1 465183..465848(+) (comFC/cflB) [Streptococcus suis strain NJ3]
ATGTCTAATTGTCTATTGTGTGATCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTGGTAAAGAAAA
ATCGGGCACCTGTGAAGAATGTTTTTTGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAACATTTTTGCTAAAAAGCTTAG
AATAGCGTTACGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGGTTTA
ATCAAGTAGAAGGACTTTTGGATGCTACAAATATTCCTTATCAATCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCG
TCTAAAAATCGAGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGGAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATCGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48