Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I95_RS10510 Genome accession   NZ_CP068096
Coordinates   2198892..2199428 (+) Length   178 a.a.
NCBI ID   WP_006317814.1    Uniprot ID   -
Organism   Serratia plymuthica strain FDAARGOS_1138     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2200370..2220165 2198892..2199428 flank 942


Gene organization within MGE regions


Location: 2198892..2220165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I95_RS10510 (I6I95_10510) ssb 2198892..2199428 (+) 537 WP_006317814.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6I95_RS10515 (I6I95_10515) - 2199491..2200240 (-) 750 WP_004948722.1 3-oxoacyl-ACP reductase family protein -
  I6I95_RS10520 (I6I95_10520) - 2200370..2201287 (+) 918 WP_004948719.1 LysR family transcriptional regulator -
  I6I95_RS10525 (I6I95_10525) bhsA 2201345..2201605 (-) 261 WP_020439895.1 multiple stress resistance protein BhsA -
  I6I95_RS10530 (I6I95_10530) - 2201922..2202590 (+) 669 WP_004948715.1 glutathione S-transferase family protein -
  I6I95_RS10535 (I6I95_10535) - 2202638..2203045 (+) 408 WP_004948713.1 VOC family protein -
  I6I95_RS10540 (I6I95_10540) - 2203401..2204762 (+) 1362 WP_020439894.1 NCS2 family permease -
  I6I95_RS10545 (I6I95_10545) - 2204947..2206596 (+) 1650 WP_006328333.1 Na+/H+ antiporter -
  I6I95_RS10550 (I6I95_10550) - 2206635..2207522 (-) 888 WP_006328328.1 LysR family transcriptional regulator -
  I6I95_RS10555 (I6I95_10555) - 2207658..2208080 (+) 423 WP_004948705.1 CidA/LrgA family protein -
  I6I95_RS10560 (I6I95_10560) - 2208073..2208762 (+) 690 WP_020439893.1 LrgB family protein -
  I6I95_RS10565 (I6I95_10565) - 2208806..2209501 (-) 696 WP_004948703.1 CTP synthase -
  I6I95_RS10570 (I6I95_10570) lpxP 2209629..2210549 (-) 921 WP_004948702.1 kdo(2)-lipid IV(A) palmitoleoyltransferase -
  I6I95_RS10575 (I6I95_10575) - 2211113..2212336 (+) 1224 WP_020439892.1 site-specific integrase -
  I6I95_RS10580 (I6I95_10580) - 2212333..2213076 (+) 744 WP_020439891.1 hypothetical protein -
  I6I95_RS10585 (I6I95_10585) - 2213211..2213426 (+) 216 WP_041417660.1 AlpA family transcriptional regulator -
  I6I95_RS10590 (I6I95_10590) - 2213597..2213767 (-) 171 WP_187293375.1 hypothetical protein -
  I6I95_RS10595 (I6I95_10595) - 2213897..2214076 (+) 180 WP_020439889.1 host cell division inhibitor Icd-like protein -
  I6I95_RS10600 (I6I95_10600) - 2214069..2214254 (+) 186 WP_020439888.1 hypothetical protein -
  I6I95_RS10605 (I6I95_10605) - 2214247..2214441 (+) 195 WP_020439887.1 hypothetical protein -
  I6I95_RS10610 (I6I95_10610) - 2214434..2214784 (+) 351 WP_020439886.1 hypothetical protein -
  I6I95_RS10615 (I6I95_10615) - 2214781..2216868 (+) 2088 WP_020439885.1 DUF927 domain-containing protein -
  I6I95_RS10620 (I6I95_10620) - 2217418..2218461 (+) 1044 WP_020439884.1 major capsid protein -
  I6I95_RS10625 (I6I95_10625) - 2218472..2218810 (+) 339 WP_020439883.1 head decoration protein -
  I6I95_RS10630 (I6I95_10630) - 2218820..2219173 (+) 354 WP_020439882.1 AlpA family transcriptional regulator -
  I6I95_RS10635 (I6I95_10635) - 2219539..2220165 (+) 627 WP_041417783.1 tail assembly protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18730.73 Da        Isoelectric Point: 5.2456

>NTDB_id=527066 I6I95_RS10510 WP_006317814.1 2198892..2199428(+) (ssb) [Serratia plymuthica strain FDAARGOS_1138]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQAAGGQGGWGQPQQPQGGNQFSGGQQARPAQNNA
PAASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=527066 I6I95_RS10510 WP_006317814.1 2198892..2199428(+) (ssb) [Serratia plymuthica strain FDAARGOS_1138]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAAGCGACTGGCGAGCAGAAAGAAAAAACCG
AATGGCACCGCGTTGTGTTGTTCGGCAAGCTGGCTGAAGTTGCGGGCGAGTATCTGCGTAAAGGTTCCCAGGTGTATATC
GAAGGTGCCCTGCAGACCCGTAAATGGACCGATCAGGCTGGCGTAGAAAAATACACCACCGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAAGGCGGCGGCGCACCTGCAGGCGGTGGTCAGGCAGCAGGCGGCCAGGGCG
GTTGGGGCCAGCCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGGCGCGCCCAGCGCAGAACAACGCG
CCGGCAGCCAGCAGCAACGAACCGCCAATGGACTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.753
  ssb Glaesserella parasuis strain SC1401

56.284

100

0.579
  ssb Neisseria meningitidis MC58

45.213

100

0.478
  ssb Neisseria gonorrhoeae MS11

45.213

100

0.478