Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6I96_RS12970 | Genome accession | NZ_CP068090 |
| Coordinates | 2622356..2622892 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Shigella boydii strain FDAARGOS_1139 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2603645..2627217 | 2622356..2622892 | within | 0 |
| IScluster/Tn | 2622993..2627965 | 2622356..2622892 | flank | 101 |
Gene organization within MGE regions
Location: 2603645..2627965
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I96_RS12880 (I6I96_12855) | - | 2603645..2604630 (-) | 986 | Protein_2539 | DUF2713 domain-containing protein | - |
| I6I96_RS12885 (I6I96_12860) | zur | 2604948..2605463 (+) | 516 | WP_004988057.1 | zinc uptake transcriptional repressor Zur | - |
| I6I96_RS12890 (I6I96_12865) | - | 2605505..2605714 (-) | 210 | WP_001030593.1 | CsbD family protein | - |
| I6I96_RS12895 (I6I96_12870) | dinF | 2605830..2607155 (-) | 1326 | WP_001308275.1 | MATE family efflux transporter DinF | - |
| I6I96_RS12900 (I6I96_12875) | lexA | 2607228..2607836 (-) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| I6I96_RS12905 (I6I96_12880) | dgkA | 2607946..2608314 (-) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| I6I96_RS12910 (I6I96_12885) | plsB | 2608485..2610908 (+) | 2424 | WP_004988121.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| I6I96_RS12915 (I6I96_12890) | ubiA | 2611063..2611935 (-) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| I6I96_RS12920 (I6I96_12895) | ubiC | 2611948..2612445 (-) | 498 | WP_001295693.1 | chorismate lyase | - |
| I6I96_RS12925 (I6I96_12900) | - | 2612668..2612874 (-) | 207 | Protein_2548 | hypothetical protein | - |
| I6I96_RS12930 (I6I96_12905) | - | 2612989..2614116 (+) | 1128 | WP_001063816.1 | IS110-like element ISSso6 family transposase | - |
| I6I96_RS12935 (I6I96_12910) | - | 2614383..2615767 (-) | 1385 | Protein_2550 | SopA family protein | - |
| I6I96_RS12940 (I6I96_12915) | - | 2615967..2616664 (+) | 698 | WP_094106546.1 | IS1 family transposase | - |
| I6I96_RS12945 (I6I96_12920) | - | 2617021..2617243 (-) | 223 | Protein_2552 | hypothetical protein | - |
| I6I96_RS12950 (I6I96_12925) | aphA | 2617645..2618358 (+) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| I6I96_RS12955 (I6I96_12930) | - | 2618469..2618885 (+) | 417 | WP_000270377.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| I6I96_RS12960 (I6I96_12935) | - | 2618889..2619245 (+) | 357 | WP_000155649.1 | MmcQ/YjbR family DNA-binding protein | - |
| I6I96_RS12965 (I6I96_12940) | uvrA | 2619280..2622102 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| I6I96_RS12970 (I6I96_12945) | ssb | 2622356..2622892 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| I6I96_RS12975 (I6I96_12950) | - | 2622993..2624309 (-) | 1317 | WP_135186281.1 | IS4-like element IS4 family transposase | - |
| I6I96_RS23960 | - | 2625601..2625675 (-) | 75 | Protein_2560 | hypothetical protein | - |
| I6I96_RS12985 (I6I96_12960) | - | 2625766..2626047 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
| I6I96_RS12990 (I6I96_12965) | pdeC | 2626477..2627211 (+) | 735 | Protein_2562 | c-di-GMP phosphodiesterase PdeC | - |
| I6I96_RS12995 (I6I96_12970) | - | 2627268..2627965 (+) | 698 | WP_094106546.1 | IS1 family transposase | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=527045 I6I96_RS12970 WP_000168305.1 2622356..2622892(+) (ssb) [Shigella boydii strain FDAARGOS_1139]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=527045 I6I96_RS12970 WP_000168305.1 2622356..2622892(+) (ssb) [Shigella boydii strain FDAARGOS_1139]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |