Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   K6967_RS00315 Genome accession   NZ_CP082201
Coordinates   52789..53790 (+) Length   333 a.a.
NCBI ID   WP_004195448.1    Uniprot ID   A0A0H3MST2
Organism   Streptococcus suis strain Transconjugant cAKJ18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 47789..58790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6967_RS00285 (K6967_00285) - 47839..48417 (+) 579 WP_011921662.1 CPBP family intramembrane glutamic endopeptidase -
  K6967_RS00290 (K6967_00290) - 48432..48860 (+) 429 WP_014636188.1 Msa family membrane protein -
  K6967_RS00295 (K6967_00295) - 48853..49725 (+) 873 WP_011921665.1 ABC transporter ATP-binding protein -
  K6967_RS00300 (K6967_00300) - 49731..50504 (+) 774 WP_012775420.1 membrane protein -
  K6967_RS00305 (K6967_00305) - 50507..52219 (+) 1713 WP_012774887.1 ABC transporter ATP-binding protein -
  K6967_RS00310 (K6967_00310) - 52321..52494 (+) 174 WP_011921669.1 hypothetical protein -
  K6967_RS00315 (K6967_00315) ruvB 52789..53790 (+) 1002 WP_004195448.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6967_RS00320 (K6967_00320) - 53790..54536 (+) 747 WP_011921670.1 GNAT family N-acetyltransferase -
  K6967_RS00325 (K6967_00325) - 54538..55173 (+) 636 WP_011921671.1 HAD-IA family hydrolase -
  K6967_RS00330 (K6967_00330) comR 55420..56319 (+) 900 WP_012774888.1 helix-turn-helix domain-containing protein Regulator
  K6967_RS00335 (K6967_00335) - 56724..57887 (+) 1164 WP_011921673.1 IS110 family transposase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37613.12 Da        Isoelectric Point: 4.4673

>NTDB_id=526908 K6967_RS00315 WP_004195448.1 52789..53790(+) (ruvB) [Streptococcus suis strain Transconjugant cAKJ18]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=526908 K6967_RS00315 WP_004195448.1 52789..53790(+) (ruvB) [Streptococcus suis strain Transconjugant cAKJ18]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAATATGTCGAGCGTACCCTGCGTCCGCAGAAATTAAA
CGAATACATCGGTCAGGACAAGGTTAAGGACCAGCTCAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCCTTTGTCATCGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACTAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAGATTCTCTACTCAGCCATGGAAGACTTCTACATCG
ACATCATGATTGGGGCTGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCCCGATTTGGGATTACCGGTCACATGGAGTATTACGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGCGACGGCCTGATT
GACGATAGCATTACGGATAAGGCCCTGACTATGCTGGATGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MST2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

90.332

99.399

0.898
  ruvB Streptococcus pneumoniae R6

90.03

99.399

0.895
  ruvB Streptococcus pneumoniae D39

90.03

99.399

0.895
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.589

97.898

0.574
  ruvB Helicobacter pylori 26695

51.064

98.799

0.505
  ruvB Synechocystis sp. PCC 6803

50.479

93.994

0.474