Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   I6J14_RS04915 Genome accession   NZ_CP068057
Coordinates   1008178..1008885 (-) Length   235 a.a.
NCBI ID   WP_003049966.1    Uniprot ID   A0A380JXI0
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003178..1013885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS04890 (I6J14_04890) pstB 1003263..1004015 (-) 753 WP_115252722.1 phosphate ABC transporter ATP-binding protein PstB -
  I6J14_RS04895 (I6J14_04895) pstA 1004017..1004832 (-) 816 WP_003049978.1 phosphate ABC transporter permease PstA -
  I6J14_RS04900 (I6J14_04900) pstC 1004825..1005688 (-) 864 WP_003049977.1 phosphate ABC transporter permease subunit PstC -
  I6J14_RS04905 (I6J14_04905) - 1005806..1006681 (-) 876 WP_115252721.1 substrate-binding domain-containing protein -
  I6J14_RS04910 (I6J14_04910) - 1006848..1008177 (-) 1330 Protein_976 ATP-binding protein -
  I6J14_RS04915 (I6J14_04915) vicR 1008178..1008885 (-) 708 WP_003049966.1 response regulator transcription factor Regulator
  I6J14_RS04920 (I6J14_04920) - 1008972..1009448 (-) 477 WP_037585091.1 cupin domain-containing protein -
  I6J14_RS04925 (I6J14_04925) - 1009629..1009784 (+) 156 WP_164549214.1 SPJ_0845 family protein -
  I6J14_RS04930 (I6J14_04930) - 1009931..1010833 (+) 903 WP_003049962.1 permease -
  I6J14_RS04935 (I6J14_04935) - 1010833..1011648 (+) 816 WP_115252720.1 TIGR03943 family protein -
  I6J14_RS04940 (I6J14_04940) ftsY 1011774..1013324 (-) 1551 WP_115252719.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27549.78 Da        Isoelectric Point: 5.7025

>NTDB_id=526719 I6J14_RS04915 WP_003049966.1 1008178..1008885(-) (vicR) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MTKQILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLDGIEVCKRLRAKAIKTPIMMV
SAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTSKEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLS
LTPKEFELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKEL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=526719 I6J14_RS04915 WP_003049966.1 1008178..1008885(-) (vicR) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGACAAAACAAATCTTATTAGTGGATGATGAAGAACATATTTTGAGGCTACTGGATTATCATCTCAGTAAAGAAGGTTT
TTCCACACAATTGGTAACAGATGGACGAAAAGCATTGACATTGGCAGAAACAGAGCCTTTTGACTTTATCCTACTTGATA
TTATGTTGCCTCGGTTAGACGGCATAGAAGTGTGTAAGCGACTAAGAGCTAAAGCTATTAAAACTCCGATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGATAAGGTTTTGGCCTTGGAATTAGGAGCTGATGATTACCTGACAAAGCCTTTTAGCCC
TAGGGAATTAGTAGCTCGTGTCAAGGCTATTTTACGGCGAACCAGTAAAGAGCAGCAAGAAGATGACACAGATGATTTCA
GGGATGATTATCGGGTATTTGGGGCCCTAACCGTCTATCCAGACCGGCATGAGGTTTATAAGGCAGATCATTTATTGAGC
CTTACCCCAAAGGAATTTGAACTCTTACTCTATCTTATGAAACATCCCAACATGACCTTAACTAGGGAACGTTTACTTGA
ACGGATTTGGGGATATGATTTTGGACAAGAAACCCGTTTAGTGGATGTTCATATTGGCAAATTGAGAGATAAGATAGAGG
ATAACCCTAAAGACCCTCAATTTATTCAAACGATTAGAGGCTATGGGTATAAGTTTAAGGAGTTATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-232)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JXI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

48.718

99.574

0.485
  micA Streptococcus pneumoniae Cp1015

48.246

97.021

0.468
  covR Lactococcus lactis subsp. lactis strain DGCC12653

40.851

100

0.409
  covR Streptococcus salivarius strain HSISS4

40.084

100

0.404