Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J16_RS11300 Genome accession   NZ_CP068055
Coordinates   2791597..2792103 (-) Length   168 a.a.
NCBI ID   WP_005429453.1    Uniprot ID   S3BB37
Organism   Sutterella wadsworthensis strain FDAARGOS_1159     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2786597..2797103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J16_RS11280 (I6J16_11280) - 2786819..2788243 (+) 1425 WP_113854491.1 efflux transporter outer membrane subunit -
  I6J16_RS11285 (I6J16_11285) - 2788258..2789559 (+) 1302 WP_113854490.1 efflux RND transporter periplasmic adaptor subunit -
  I6J16_RS11290 (I6J16_11290) - 2789570..2790292 (+) 723 WP_005429449.1 ABC transporter ATP-binding protein -
  I6J16_RS11295 (I6J16_11295) - 2790289..2791497 (+) 1209 WP_005429451.1 ABC transporter permease -
  I6J16_RS11300 (I6J16_11300) ssb 2791597..2792103 (-) 507 WP_005429453.1 single-stranded DNA-binding protein Machinery gene
  I6J16_RS11305 (I6J16_11305) - 2792139..2793353 (-) 1215 WP_021994889.1 MFS transporter -
  I6J16_RS11310 (I6J16_11310) - 2793468..2796260 (+) 2793 WP_113854489.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18051.03 Da        Isoelectric Point: 5.9326

>NTDB_id=526642 I6J16_RS11300 WP_005429453.1 2791597..2792103(-) (ssb) [Sutterella wadsworthensis strain FDAARGOS_1159]
MASVNKVILLGNLGADPDVRYTPDGGTAICTLSLATSRRYKNRDGQFTEETEWHRVVLFGRTAEIARDYLKKGRSVYVEG
RLRTRKWTDQNGNDRWTTEVVCENMQLLGGRDGSGQGGPSGGYVPAGDGFESAPRPAAPRSPAAAPQPQASPAAASAPID
SLDEDVPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=526642 I6J16_RS11300 WP_005429453.1 2791597..2792103(-) (ssb) [Sutterella wadsworthensis strain FDAARGOS_1159]
ATGGCTTCCGTCAACAAGGTCATTCTTCTCGGCAATTTGGGCGCAGATCCGGACGTCCGCTACACACCCGATGGCGGTAC
AGCAATTTGTACCCTCAGTCTCGCCACCTCCCGTCGCTACAAGAACCGTGACGGTCAGTTCACCGAGGAAACGGAATGGC
ACCGCGTTGTGCTTTTCGGTCGTACAGCAGAAATCGCCCGCGACTATCTCAAAAAGGGGCGCTCTGTCTACGTTGAAGGC
CGCCTGCGCACCCGCAAGTGGACTGATCAGAACGGCAACGACCGTTGGACCACCGAAGTGGTCTGCGAAAATATGCAGCT
TCTTGGTGGCCGTGACGGCAGTGGTCAAGGCGGCCCGAGCGGTGGCTACGTCCCTGCCGGCGACGGCTTTGAATCCGCAC
CTCGCCCCGCAGCGCCTCGTTCTCCGGCTGCTGCCCCGCAGCCGCAGGCTTCACCTGCCGCCGCATCGGCGCCCATCGAC
TCACTGGATGAAGACGTCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S3BB37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.603

100

0.518
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.506
  ssb Neisseria meningitidis MC58

43.503

100

0.458
  ssb Neisseria gonorrhoeae MS11

42.529

100

0.44