Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JKA73_RS05215 Genome accession   NZ_CP068048
Coordinates   1255043..1255540 (+) Length   165 a.a.
NCBI ID   WP_011551191.1    Uniprot ID   Q1DDE2
Organism   Myxococcus xanthus strain R31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1250043..1260540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKA73_RS05195 (JKA73_05195) - 1250602..1251063 (+) 462 WP_090485059.1 PTS sugar transporter subunit IIA -
  JKA73_RS05200 (JKA73_05200) - 1251097..1251942 (+) 846 WP_201424029.1 hypothetical protein -
  JKA73_RS05205 (JKA73_05205) dtd 1251939..1252400 (-) 462 WP_140860836.1 D-aminoacyl-tRNA deacylase -
  JKA73_RS05210 (JKA73_05210) dacB 1252586..1254832 (+) 2247 WP_201424030.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  JKA73_RS05215 (JKA73_05215) ssb 1255043..1255540 (+) 498 WP_011551191.1 single-stranded DNA-binding protein Machinery gene
  JKA73_RS05220 (JKA73_05220) - 1255663..1256343 (-) 681 WP_201424031.1 succinate dehydrogenase -
  JKA73_RS05225 (JKA73_05225) - 1256606..1257490 (+) 885 WP_201424032.1 Hsp33 family molecular chaperone HslO -
  JKA73_RS05230 (JKA73_05230) - 1257513..1258556 (+) 1044 WP_225888549.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -
  JKA73_RS05235 (JKA73_05235) - 1258619..1259362 (+) 744 WP_201424033.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17629.34 Da        Isoelectric Point: 5.7963

>NTDB_id=526510 JKA73_RS05215 WP_011551191.1 1255043..1255540(+) (ssb) [Myxococcus xanthus strain R31]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGRRQFSQQRGGDNNDYGQPPPDDMGGGHGGGNGD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=526510 JKA73_RS05215 WP_011551191.1 1255043..1255540(+) (ssb) [Myxococcus xanthus strain R31]
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGTGGCCGTGACGCCGGAGACGGCATGGGCGGCGGGGGCGGGGGCGGTGGACGCCGGCAGTTCTCCCAGC
AGCGTGGGGGAGACAACAACGACTACGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGCAACGGCGAC
GACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1DDE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.253

100

0.521
  ssb Glaesserella parasuis strain SC1401

41.989

100

0.461
  ssb Neisseria meningitidis MC58

42.197

100

0.442
  ssb Neisseria gonorrhoeae MS11

42.197

100

0.442