Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJQ97_RS22540 Genome accession   NZ_CP068034
Coordinates   5305279..5305845 (-) Length   188 a.a.
NCBI ID   WP_003317093.1    Uniprot ID   A0A0P9GWC5
Organism   Pseudomonas syringae strain BIM B-268     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5300279..5310845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ97_RS22515 (JJQ97_22160) - 5300917..5301363 (+) 447 Protein_4448 sugar ABC transporter permease -
  JJQ97_RS22520 (JJQ97_22165) ugpC 5301423..5302529 (+) 1107 WP_201418612.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  JJQ97_RS22525 (JJQ97_22170) - 5302536..5303297 (+) 762 WP_201418613.1 glycerophosphoryl diester phosphodiesterase -
  JJQ97_RS22530 (JJQ97_22175) - 5303294..5304037 (+) 744 WP_003431801.1 inositol monophosphatase family protein -
  JJQ97_RS22535 (JJQ97_22180) - 5304037..5305149 (+) 1113 WP_201418614.1 endo-1,4-beta-xylanase -
  JJQ97_RS22540 (JJQ97_22185) ssb 5305279..5305845 (-) 567 WP_003317093.1 single-stranded DNA-binding protein Machinery gene
  JJQ97_RS22545 (JJQ97_22190) - 5305855..5307249 (-) 1395 WP_003426593.1 MFS transporter -
  JJQ97_RS22550 (JJQ97_22195) uvrA 5307379..5310213 (+) 2835 WP_003317094.1 excinuclease ABC subunit UvrA -
  JJQ97_RS22555 (JJQ97_22200) bfr 5310308..5310772 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20917.05 Da        Isoelectric Point: 5.9404

>NTDB_id=526462 JJQ97_RS22540 WP_003317093.1 5305279..5305845(-) (ssb) [Pseudomonas syringae strain BIM B-268]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=526462 JJQ97_RS22540 WP_003317093.1 5305279..5305845(-) (ssb) [Pseudomonas syringae strain BIM B-268]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCTC
GTCCACAACAGTCGCGTCCACAACAGTCAGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCC
TTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9GWC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.564
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.473
  ssb Neisseria meningitidis MC58

44.92

99.468

0.447
  ssb Neisseria gonorrhoeae MS11

44.92

99.468

0.447