Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   JKJ11_RS09715 Genome accession   NZ_CP068024
Coordinates   2041834..2042424 (-) Length   196 a.a.
NCBI ID   WP_252038080.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2036834..2047424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS09695 (JKJ11_09680) - 2037036..2038316 (-) 1281 WP_038230239.1 DUF945 family protein -
  JKJ11_RS09700 (JKJ11_09685) - 2038464..2040416 (+) 1953 WP_252038079.1 ATP-binding protein -
  JKJ11_RS09705 (JKJ11_09690) - 2040428..2040925 (+) 498 WP_062459398.1 response regulator -
  JKJ11_RS09710 (JKJ11_09695) - 2041236..2041781 (+) 546 WP_006074729.1 hypothetical protein -
  JKJ11_RS09715 (JKJ11_09700) tfoX 2041834..2042424 (-) 591 WP_252038080.1 TfoX/Sxy family DNA transformation protein Regulator
  JKJ11_RS09720 (JKJ11_09705) - 2042799..2043722 (+) 924 WP_006074731.1 HDOD domain-containing protein -
  JKJ11_RS09725 (JKJ11_09710) - 2043813..2044718 (+) 906 WP_006074732.1 lysine exporter LysO family protein -
  JKJ11_RS09730 (JKJ11_09715) - 2044817..2045329 (+) 513 WP_006074733.1 hypothetical protein -
  JKJ11_RS09735 (JKJ11_09720) panP 2045514..2047166 (+) 1653 WP_252038081.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22547.85 Da        Isoelectric Point: 9.2931

>NTDB_id=526332 JKJ11_RS09715 WP_252038080.1 2041834..2042424(-) (tfoX) [Vibrio sp. SCSIO 43133]
MIEQSFYDYTIQFGISQKRSMFGGTGLFKDGAMYALISNDRVFIRGGCALDETLQNLNCEKFRHVKKQSTATVNYYDITA
LFNERAPMLSDLVQRSITNSVEQQSSKKSAENRRLRDLPNMQLTLERMVKKSGIEDVKTFLELGAPQVFNKVKRTYGNDV
DVKLLWKFAGAVEGIHWKLIQDPRKQQLLQYCSEID

Nucleotide


Download         Length: 591 bp        

>NTDB_id=526332 JKJ11_RS09715 WP_252038080.1 2041834..2042424(-) (tfoX) [Vibrio sp. SCSIO 43133]
ATGATAGAGCAATCTTTTTACGACTACACAATTCAATTCGGCATCTCTCAAAAGCGCTCCATGTTTGGTGGTACAGGGCT
GTTTAAAGACGGTGCTATGTATGCGCTTATCAGTAACGATAGAGTTTTTATTCGTGGTGGCTGTGCTTTAGACGAGACGC
TACAAAACCTAAATTGTGAAAAGTTTAGGCATGTTAAAAAGCAATCTACAGCAACCGTTAATTACTATGACATTACGGCG
TTGTTTAATGAAAGAGCACCGATGCTAAGTGACTTAGTGCAGCGTTCCATTACTAATTCTGTTGAACAGCAATCGAGCAA
AAAGTCTGCAGAAAATAGAAGACTTAGAGACCTACCGAATATGCAGCTCACGCTCGAACGTATGGTGAAGAAGTCTGGCA
TTGAAGATGTAAAAACATTCTTGGAGTTGGGTGCGCCGCAAGTGTTCAATAAAGTAAAAAGAACCTATGGCAATGATGTG
GATGTAAAATTGCTTTGGAAATTTGCAGGGGCGGTTGAGGGAATACACTGGAAGTTGATTCAAGACCCCCGTAAACAGCA
ACTGCTACAGTACTGCTCAGAAATTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(12-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

65.979

98.98

0.653
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

65.979

98.98

0.653
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

65.979

98.98

0.653
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

65.979

98.98

0.653
  tfoX Vibrio cholerae strain A1552

65.979

98.98

0.653
  tfoX Vibrio campbellii strain DS40M4

63.542

97.959

0.622
  tfoX Vibrio parahaemolyticus RIMD 2210633

63.542

97.959

0.622
  tfoX Aliivibrio fischeri ES114

56.085

96.429

0.541