Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJQ94_RS22445 Genome accession   NZ_CP068023
Coordinates   3789968..3790621 (-) Length   217 a.a.
NCBI ID   WP_010376633.1    Uniprot ID   A0A2K9JTM0
Organism   Pseudoalteromonas sp. GCY     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3784968..3795621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ94_RS22435 (JJQ94_22435) - 3787190..3788101 (+) 912 WP_099030713.1 pyridoxal-phosphate dependent enzyme -
  JJQ94_RS22440 (JJQ94_22440) - 3788123..3789709 (-) 1587 WP_099030712.1 EAL domain-containing protein -
  JJQ94_RS22445 (JJQ94_22445) ssb 3789968..3790621 (-) 654 WP_010376633.1 single-stranded DNA-binding protein Machinery gene
  JJQ94_RS22450 (JJQ94_22450) - 3790639..3792006 (-) 1368 WP_099030771.1 MFS transporter -
  JJQ94_RS22455 (JJQ94_22455) - 3792147..3792893 (-) 747 WP_099030711.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23796.72 Da        Isoelectric Point: 4.7483

>NTDB_id=526316 JJQ94_RS22445 WP_010376633.1 3789968..3790621(-) (ssb) [Pseudoalteromonas sp. GCY]
MARGVNKVILVGNLGQDPEVRYMPNGNGVANISIATTDSWKDKNTGQLQERTEWHRVVLFGKLAEVAGEYLRKGSQVYIE
GRLQTRKWTDQSGQEKYTTEIVVDMGGQMQMLGGRGEQQGQGGGQYQGGQQQQNNYGQQSYNQAPQQQYSQPQQSQSNQQ
QGGFAPQQSQQNSQQSSGFGGQSQGGFAPQQNQNNGQSGGSSNPMEPPIDFDDDIPF

Nucleotide


Download         Length: 654 bp        

>NTDB_id=526316 JJQ94_RS22445 WP_010376633.1 3789968..3790621(-) (ssb) [Pseudoalteromonas sp. GCY]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTAGGTAATCTGGGCCAAGATCCTGAAGTTCGCTATATGCCAAACGGTAA
CGGCGTGGCTAACATCAGCATTGCAACTACGGATAGCTGGAAAGATAAAAACACTGGTCAATTGCAAGAGCGTACAGAAT
GGCATCGTGTGGTGTTGTTCGGTAAACTTGCGGAAGTTGCGGGTGAGTATTTAAGAAAAGGCTCGCAGGTTTACATTGAA
GGTCGTCTACAGACTCGTAAGTGGACAGATCAAAGCGGCCAAGAAAAGTACACAACGGAAATCGTTGTGGACATGGGTGG
TCAAATGCAAATGCTAGGTGGCCGTGGCGAGCAGCAGGGTCAAGGTGGTGGTCAGTACCAAGGTGGTCAACAGCAGCAAA
ACAATTATGGCCAGCAAAGCTATAATCAAGCACCTCAGCAGCAATATTCGCAGCCACAGCAAAGCCAGTCAAACCAGCAG
CAAGGTGGATTCGCACCGCAGCAATCGCAGCAGAATTCACAGCAGTCTTCTGGATTTGGTGGCCAGTCTCAAGGTGGCTT
TGCACCACAACAGAACCAAAACAACGGTCAATCAGGCGGTAGCTCAAATCCTATGGAGCCGCCAATTGATTTTGATGATG
ACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9JTM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.455

100

0.562
  ssb Glaesserella parasuis strain SC1401

46.977

99.078

0.465
  ssb Neisseria meningitidis MC58

42.326

99.078

0.419
  ssb Neisseria gonorrhoeae MS11

42.326

99.078

0.419