Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   JJN14_RS02565 Genome accession   NZ_CP067992
Coordinates   490530..491189 (-) Length   219 a.a.
NCBI ID   WP_201058816.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 485530..496189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS02535 (JJN14_02535) - 485657..486223 (+) 567 WP_042900462.1 aminodeoxychorismate/anthranilate synthase component II -
  JJN14_RS02540 (JJN14_02540) trpD 486234..487238 (+) 1005 WP_201058812.1 anthranilate phosphoribosyltransferase -
  JJN14_RS02545 (JJN14_02545) trpC 487235..488002 (+) 768 WP_201058813.1 indole-3-glycerol phosphate synthase TrpC -
  JJN14_RS02550 (JJN14_02550) - 487989..488588 (+) 600 WP_201058814.1 phosphoribosylanthranilate isomerase -
  JJN14_RS02555 (JJN14_02555) trpB 488566..489789 (+) 1224 WP_000331265.1 tryptophan synthase subunit beta -
  JJN14_RS02560 (JJN14_02560) trpA 489782..490558 (+) 777 WP_201058815.1 tryptophan synthase subunit alpha -
  JJN14_RS02565 (JJN14_02565) cclA/cilC 490530..491189 (-) 660 WP_201058816.1 prepilin peptidase Machinery gene
  JJN14_RS02570 (JJN14_02570) - 491259..491714 (+) 456 WP_201058817.1 GNAT family N-acetyltransferase -
  JJN14_RS10335 (JJN14_02575) - 491732..492024 (+) 293 Protein_449 transposase -
  JJN14_RS02580 (JJN14_02580) - 492134..492337 (-) 204 WP_201058818.1 CsbD family protein -
  JJN14_RS02585 (JJN14_02585) - 492368..492976 (-) 609 WP_201058819.1 Asp23/Gls24 family envelope stress response protein -
  JJN14_RS02590 (JJN14_02590) - 493007..493177 (-) 171 WP_000455064.1 DUF2273 domain-containing protein -
  JJN14_RS02595 (JJN14_02595) amaP 493189..493761 (-) 573 WP_201058820.1 alkaline shock response membrane anchor protein AmaP -
  JJN14_RS02600 (JJN14_02600) - 493839..494074 (-) 236 Protein_454 GlsB/YeaQ/YmgE family stress response membrane protein -
  JJN14_RS02605 (JJN14_02605) mgaSpn 494450..495928 (+) 1479 WP_201058822.1 virulence factor transcriptional regulator MgaSpn -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24654.76 Da        Isoelectric Point: 7.2760

>NTDB_id=526145 JJN14_RS02565 WP_201058816.1 490530..491189(-) (cclA/cilC) [Streptococcus mitis strain S022-V7-A3]
MINIYFFLVGSILASFLGLVIDRFPEQSIISPASHCDSCQTPLRPLDLIPILSQVFNHFRCRYCKAPYPVWYALLELGLG
LIFLLYSWELLSLSQVILITAGLTLGIYDFRHQEYPLLVWMTFHLILMASSGWNLVMVFFLALGILAHFIDIRMGAGDFL
FLASCALAFSATELLILIQFASATGILAFLLQKKKERLPFVPFLLLAACVIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=526145 JJN14_RS02565 WP_201058816.1 490530..491189(-) (cclA/cilC) [Streptococcus mitis strain S022-V7-A3]
ATGATTAATATTTATTTTTTTCTTGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGCCCAGCCAGTCACTGCGATTCCTGTCAGACTCCCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTTTTTAATCACTTTCGCTGTCGCTACTGCAAGGCTCCTTATCCCGTCTGGTATGCCCTTTTGGAACTAGGCTTAGGA
CTCATATTTCTGCTTTACTCTTGGGAATTACTTTCCTTGAGTCAAGTCATCCTAATCACTGCGGGTTTGACCTTGGGTAT
CTACGACTTTCGCCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTCATGGCTTCCTCTGGCTGGA
ATCTGGTCATGGTCTTCTTCCTTGCCCTTGGAATTTTAGCTCATTTTATTGATATTCGCATGGGCGCAGGGGATTTTCTC
TTTCTGGCTTCTTGTGCTCTCGCCTTTAGCGCGACCGAATTACTGATCTTGATTCAGTTCGCTTCTGCGACGGGCATCCT
AGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTGCTTGTGTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

95.89

100

0.959

  cclA/cilC Streptococcus pneumoniae Rx1

93.151

100

0.932

  cclA/cilC Streptococcus pneumoniae D39

93.151

100

0.932

  cclA/cilC Streptococcus pneumoniae R6

93.151

100

0.932

  cclA/cilC Streptococcus pneumoniae TIGR4

89.954

100

0.9

  cclA/cilC Streptococcus mitis NCTC 12261

87.671

100

0.877