Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   JJN14_RS00110 Genome accession   NZ_CP067992
Coordinates   22069..22305 (+) Length   78 a.a.
NCBI ID   WP_201058582.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 20608..21856 22069..22305 flank 213


Gene organization within MGE regions


Location: 20608..22305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS00110 (JJN14_00110) comW 22069..22305 (+) 237 WP_201058582.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 10033.54 Da        Isoelectric Point: 6.8674

>NTDB_id=526119 JJN14_RS00110 WP_201058582.1 22069..22305(+) (comW) [Streptococcus mitis strain S022-V7-A3]
MLQEIYEQMTDFYRNIEEEYGMSFGDNFDWEHVHFKFLIYYLVRYRIVRHRDFIVYHYRVAYRFYLEKMVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=526119 JJN14_RS00110 WP_201058582.1 22069..22305(+) (comW) [Streptococcus mitis strain S022-V7-A3]
ATGTTACAAGAGATTTATGAGCAGATGACGGATTTTTATAGAAATATTGAAGAAGAGTATGGTATGTCCTTCGGTGATAA
TTTTGATTGGGAACATGTTCATTTTAAGTTTTTGATTTATTATCTTGTCCGATATCGTATTGTGCGCCATCGGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTTTATCTTGAAAAGATGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis SK321

83.333

100

0.833
  comW Streptococcus mitis NCTC 12261

83.117

98.718

0.821
  comW Streptococcus pneumoniae Rx1

82.051

100

0.821
  comW Streptococcus pneumoniae D39

82.051

100

0.821
  comW Streptococcus pneumoniae R6

82.051

100

0.821
  comW Streptococcus pneumoniae TIGR4

82.051

100

0.821