Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JIP62_RS04835 Genome accession   NZ_CP067977
Coordinates   970430..970930 (-) Length   166 a.a.
NCBI ID   WP_201103781.1    Uniprot ID   -
Organism   Brevundimonas vitisensis strain GR-TSA-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 965430..975930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIP62_RS04815 (JIP62_04815) - 967338..967889 (+) 552 WP_201103777.1 superoxide dismutase family protein -
  JIP62_RS04820 (JIP62_04820) - 967896..968885 (-) 990 WP_201103778.1 acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein -
  JIP62_RS04825 (JIP62_04825) - 968973..969881 (-) 909 WP_201103779.1 DMT family transporter -
  JIP62_RS04830 (JIP62_04830) - 969953..970420 (-) 468 WP_201103780.1 hypothetical protein -
  JIP62_RS04835 (JIP62_04835) ssb 970430..970930 (-) 501 WP_201103781.1 single-stranded DNA-binding protein Machinery gene
  JIP62_RS04840 (JIP62_04840) - 971203..971658 (-) 456 WP_230974867.1 hypothetical protein -
  JIP62_RS04845 (JIP62_04845) - 971655..972332 (-) 678 WP_201103782.1 hypothetical protein -
  JIP62_RS04850 (JIP62_04850) - 972414..975140 (-) 2727 WP_230974868.1 transcriptional regulator -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17841.70 Da        Isoelectric Point: 5.9730

>NTDB_id=526113 JIP62_RS04835 WP_201103781.1 970430..970930(-) (ssb) [Brevundimonas vitisensis strain GR-TSA-9]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDKDGVEKYSTEVVVGKFKGELTMLGGRDGGGGGSQGGGYGGGRGNDDDYSSGFSTGGANKPSGPKESYDL
NDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=526113 JIP62_RS04835 WP_201103781.1 970430..970930(-) (ssb) [Brevundimonas vitisensis strain GR-TSA-9]
ATGGCTGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCCGCGACCCCGAAATCCGGTCCATGCCGAACGGCGA
CCGGATCGCCAATCTGTCGATCGCCACGTCCGAGACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTGATCTTCAACGACAACATCGTCAAGGTCGTTGAAAACTATGTGAAAAAGGGCTCGACCGTCTATATC
GAAGGCGCGCTTCAGACCCGCAAGTGGACCGACAAGGACGGCGTCGAGAAATATTCGACCGAGGTCGTGGTGGGCAAGTT
CAAGGGTGAGCTGACCATGCTGGGCGGCCGTGACGGCGGCGGCGGCGGATCGCAGGGCGGCGGCTATGGCGGCGGCCGCG
GAAATGACGACGACTATTCCTCGGGCTTCTCGACCGGCGGGGCCAACAAGCCCAGCGGTCCCAAGGAAAGCTACGACCTG
AACGACGACATCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.989

100

0.518
  ssb Vibrio cholerae strain A1552

47.977

100

0.5
  ssb Neisseria meningitidis MC58

39.665

100

0.428
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.428