Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJ669_RS24235 Genome accession   NZ_CP067966
Coordinates   5026166..5026690 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain ARLG-8054     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5021166..5031690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJ669_RS24225 (JJ669_24170) - 5021610..5023868 (-) 2259 WP_240247373.1 TonB-dependent siderophore receptor -
  JJ669_RS24230 (JJ669_24175) - 5024457..5026037 (+) 1581 WP_182962333.1 lytic transglycosylase F -
  JJ669_RS24235 (JJ669_24180) ssb 5026166..5026690 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JJ669_RS24240 (JJ669_24185) uvrA 5026945..5029770 (+) 2826 WP_023291635.1 excinuclease ABC subunit UvrA -
  JJ669_RS24245 (JJ669_24190) - 5029771..5030127 (-) 357 WP_023291634.1 MmcQ/YjbR family DNA-binding protein -
  JJ669_RS24250 (JJ669_24195) - 5030131..5030547 (-) 417 WP_048296434.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JJ669_RS24255 (JJ669_24200) aphA 5030679..5031392 (-) 714 WP_004151745.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=526101 JJ669_RS24235 WP_004151744.1 5026166..5026690(-) (ssb) [Klebsiella quasipneumoniae strain ARLG-8054]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=526101 JJ669_RS24235 WP_004151744.1 5026166..5026690(-) (ssb) [Klebsiella quasipneumoniae strain ARLG-8054]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCAGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTACCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCTCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5