Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6129_RS23510 Genome accession   NZ_CP082097
Coordinates   4721278..4721814 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain MS15052     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4716278..4726814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6129_RS23490 (K6129_23310) aphA 4716567..4717280 (+) 714 WP_001226933.1 acid phosphatase AphA -
  K6129_RS23495 (K6129_23315) yjbQ 4717391..4717807 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  K6129_RS23500 (K6129_23320) yjbR 4717811..4718167 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  K6129_RS23505 (K6129_23325) uvrA 4718202..4721024 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  K6129_RS23510 (K6129_23330) ssb 4721278..4721814 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  K6129_RS23515 (K6129_23335) yjcB 4721913..4722194 (-) 282 WP_001296643.1 YjcB family protein -
  K6129_RS23520 (K6129_23340) pdeC 4722623..4724209 (+) 1587 WP_001314348.1 c-di-GMP phosphodiesterase PdeC -
  K6129_RS23525 (K6129_23345) soxS 4724212..4724535 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  K6129_RS23530 (K6129_23350) soxR 4724621..4725085 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=526091 K6129_RS23510 WP_000168305.1 4721278..4721814(+) (ssb) [Escherichia coli strain MS15052]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=526091 K6129_RS23510 WP_000168305.1 4721278..4721814(+) (ssb) [Escherichia coli strain MS15052]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489