Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJN09_RS23045 Genome accession   NZ_CP067412
Coordinates   5083481..5083999 (-) Length   172 a.a.
NCBI ID   WP_003228709.1    Uniprot ID   J2XFA9
Organism   Pseudomonas sp. HS6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5078481..5088999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN09_RS23020 (JJN09_22990) - 5078992..5079627 (+) 636 WP_249483929.1 DUF2491 family protein -
  JJN09_RS23025 (JJN09_22995) - 5079641..5080066 (+) 426 WP_085712345.1 DUF350 domain-containing protein -
  JJN09_RS23030 (JJN09_23000) - 5080084..5080782 (+) 699 WP_249483930.1 DUF1190 domain-containing protein -
  JJN09_RS23035 (JJN09_23005) - 5080785..5081942 (+) 1158 WP_249483931.1 glutathionylspermidine synthase family protein -
  JJN09_RS23040 (JJN09_23010) - 5082008..5083213 (-) 1206 WP_249483932.1 acyltransferase -
  JJN09_RS23045 (JJN09_23015) ssb 5083481..5083999 (-) 519 WP_003228709.1 single-stranded DNA-binding protein Machinery gene
  JJN09_RS23050 (JJN09_23020) - 5084009..5085406 (-) 1398 WP_007955631.1 MFS transporter -
  JJN09_RS23055 (JJN09_23025) uvrA 5085598..5088432 (+) 2835 WP_249483933.1 excinuclease ABC subunit UvrA -
  JJN09_RS23060 (JJN09_23030) bfr 5088498..5088965 (-) 468 WP_085733015.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19115.25 Da        Isoelectric Point: 5.9314

>NTDB_id=525948 JJN09_RS23045 WP_003228709.1 5083481..5083999(-) (ssb) [Pseudomonas sp. HS6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=525948 JJN09_RS23045 WP_003228709.1 5083481..5083999(-) (ssb) [Pseudomonas sp. HS6]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGCCAGGATCCCGAAGTACGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTATCGATGTTCGGCAAGGTTGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTATCAGCAGCAGGCGCCACGCC
AGCAGGCTCCGCGTCCGCAGCAGTCGGCACCTCAGCAGCGTTCGGCTCCGGCTCCACAGCAGGCCGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2XFA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.242

100

0.616
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.494