Detailed information NTG0525946

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JJN09_RS21930
• Genome accession: NZ_CP067412
• Coordinates: 4843638..4844984 (+)
• Length: 448 a.a.
• NCBI ID: WP_249483733.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HS6
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4838638..4849984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJN09_RS21905 (JJN09_21875)	pgeF	4838846..4839568 (-)	723	WP_249483729.1	peptidoglycan editing factor PgeF	-
JJN09_RS21910 (JJN09_21880)	rluD	4839565..4840527 (-)	963	WP_249483730.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
JJN09_RS21915 (JJN09_21885)	-	4840680..4841702 (+)	1023	WP_249483731.1	outer membrane protein assembly factor BamD	-
JJN09_RS21920 (JJN09_21890)	-	4841829..4842062 (+)	234	WP_249483732.1	PP0621 family protein	-
JJN09_RS21925 (JJN09_21895)	pilS	4842052..4843641 (+)	1590	WP_249490838.1	PAS domain-containing sensor histidine kinase	Regulator
JJN09_RS21930 (JJN09_21900)	pilR	4843638..4844984 (+)	1347	WP_249483733.1	sigma-54 dependent transcriptional regulator	Regulator
JJN09_RS21935 (JJN09_21905)	thiO	4845128..4846228 (-)	1101	WP_249483734.1	glycine oxidase ThiO	-
JJN09_RS21940 (JJN09_21910)	-	4846286..4846687 (-)	402	WP_249483735.1	type IV pilin protein	-
JJN09_RS21945 (JJN09_21915)	-	4846702..4849794 (-)	3093	WP_249483736.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50226.52 Da
• Isoelectric Point: 6.5937

>NTDB_id=525946 JJN09_RS21930 WP_249483733.1 4843638..4844984(+) (pilR) [Pseudomonas sp. HS6]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAKALLNRDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALRMPTTGGVCTSIDRRLLGDSQPMRDLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
SHVLKRLAHGTGQPSTRLHPQALEVLKNYRFPGNVRELENVLERAHTLCENRMIEADDLRLSEGNCAAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=525946 JJN09_RS21930 WP_249483733.1 4843638..4844984(+) (pilR) [Pseudomonas sp. HS6]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACTTTCAGCGCACGTAATCTCGGCGAAGCCAAGGCGTTGCTGAATCGCGACACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACCGGGCTGGAGCTGGTGCAGCACATTCAGCAACGCTACCCGCAATTGCCG
GTGGCGATGATTACGGCCTACGGCAGCCTGGAAACGGCGATCAACGCCCTGAAGGCCGGGGCTTTTGATTTCCTGACCAA
ACCGGTGGACCTCACGCGGCTGCGTGAACTGGTCGCCACGGCGTTGCGCATGCCCACGACCGGCGGTGTCTGTACCTCGA
TTGACCGGCGCCTGCTCGGCGACTCGCAGCCGATGCGCGATCTGCGCAAACAGATCGACAAACTGGCCCGCAGTCAGGCG
CCGGTCTACATCAGCGGTGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATTCACGAGCAAGGCCCGCGCGCCAG
CCAGCCGTTCGTGCCGGTGAACTGCGGGGCCATTCCTTCAGAGTTGATGGAAAGCGAGTTCTTCGGCCATCGCAAAGGCA
GTTTCACCGGCGCGGTGGAGGACAAACCGGGTCTCTTCCAGGCAGCCCATGGCGGGACGTTGTTTCTCGATGAAGTGGCG
GACTTGCCGCTATCGATGCAGGTCAAGTTGCTGCGGGCCATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGGATTCTCTGCGCCACCCACAAGGATCTGGACGCGGAAGTCTCCGCCGAGCGCTTTCGGCAGG
ACCTGTATTACCGGCTGAACGTGATCGAACTGCGCGTACCGTCCCTGCGCGAACGCCGTGACGATATCGAAGCGTTGGCC
TCCCATGTGCTCAAGCGTCTGGCCCACGGCACCGGTCAACCCTCGACCCGTCTGCACCCGCAAGCGCTTGAAGTCTTGAA
GAACTACCGCTTCCCGGGAAATGTCCGGGAGCTTGAGAACGTCCTCGAGCGCGCGCACACGTTGTGCGAAAACCGCATGA
TCGAAGCCGACGACCTGCGCCTGAGCGAAGGCAACTGCGCGGCCGAAGGTGGCATCGCCGACCTGACGCAGATCGACAAC
CTGGAAGACTATCTGGAGAACGTCGAGCGCAAGCTGATCCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCAGC
GGCCCAGCGGTTGAATCTATCGTTTCGATCGATGCGTTACAGGCTCAAGAAACTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5
luxO	Vibrio cholerae strain A1552	37.613	99.107	0.373