Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JJN09_RS21925 Genome accession   NZ_CP067412
Coordinates   4842052..4843641 (+) Length   529 a.a.
NCBI ID   WP_249490838.1    Uniprot ID   -
Organism   Pseudomonas sp. HS6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4837052..4848641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN09_RS21905 (JJN09_21875) pgeF 4838846..4839568 (-) 723 WP_249483729.1 peptidoglycan editing factor PgeF -
  JJN09_RS21910 (JJN09_21880) rluD 4839565..4840527 (-) 963 WP_249483730.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JJN09_RS21915 (JJN09_21885) - 4840680..4841702 (+) 1023 WP_249483731.1 outer membrane protein assembly factor BamD -
  JJN09_RS21920 (JJN09_21890) - 4841829..4842062 (+) 234 WP_249483732.1 PP0621 family protein -
  JJN09_RS21925 (JJN09_21895) pilS 4842052..4843641 (+) 1590 WP_249490838.1 PAS domain-containing sensor histidine kinase Regulator
  JJN09_RS21930 (JJN09_21900) pilR 4843638..4844984 (+) 1347 WP_249483733.1 sigma-54 dependent transcriptional regulator Regulator
  JJN09_RS21935 (JJN09_21905) thiO 4845128..4846228 (-) 1101 WP_249483734.1 glycine oxidase ThiO -
  JJN09_RS21940 (JJN09_21910) - 4846286..4846687 (-) 402 WP_249483735.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58854.79 Da        Isoelectric Point: 6.8667

>NTDB_id=525945 JJN09_RS21925 WP_249490838.1 4842052..4843641(+) (pilS) [Pseudomonas sp. HS6]
MIAEATNATRKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDELLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALIDILLLCGLFYAAGGVASPIGNLLIVSVAISNTLLRRRIGVLIAAIAALGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAGALLVQGLIRRLEVSETLAEQRASEVISLEALNALILQRMRTGILVLDEQRRVQLANHSARTLLAQSPLEGHLID
DYSTALVERLHLWLNNPTLRPQSLKIATNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLEPWLAQFVDESREQASER
QRIHLHIESGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLRLFIDPESQLAVLEVQDNGPGVALDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=525945 JJN09_RS21925 WP_249490838.1 4842052..4843641(+) (pilS) [Pseudomonas sp. HS6]
GTGATCGCTGAGGCCACCAACGCCACTCGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTATCGTTTAAGCGT
CGGCATCACTCTGGTGTTGCTGATTTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCGACGACGAGTTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTGGAGAACATCCGCCGCCCGGCCCAGTTGTTC
GGGCTGGCCCTGATCGACATCCTGCTGCTGTGCGGGCTGTTTTACGCCGCTGGCGGCGTGGCCAGCCCGATCGGCAATCT
GCTGATCGTCTCGGTGGCCATCAGCAATACCCTGTTGCGACGACGTATCGGTGTGCTGATTGCGGCCATCGCGGCACTCG
GCATTGTCGGCCTCAGCTTCCTGCTGAGCTTCAGCCATCCCTTGAGCGCCAACGAATACCTGCAAGCGGGCACCCTCGGC
GCCCTGTGTTTTGCCGGCGCCCTTCTGGTTCAAGGCTTGATCCGCCGCCTCGAAGTCAGTGAGACCCTGGCCGAACAACG
GGCCAGCGAGGTGATCAGCCTCGAAGCCCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTCCTCGACG
AACAACGCCGGGTACAGCTGGCCAACCACAGCGCCCGGACCCTGCTGGCCCAGTCGCCTCTTGAGGGGCATCTGATCGAT
GATTATTCGACCGCGCTGGTCGAGCGTCTGCACCTGTGGCTGAACAACCCGACCCTGCGCCCCCAAAGCCTGAAAATCGC
GACCAACGGTCTGGAACTGCAACCCAGCTTCATCGCACTGGAACAGAGCCCCAACCGCCAGACCCTGGTGTTTCTCGAAG
ACCTCGCTCAGATCGCCCAACAGGCCCAGCAACTGAAGCTCGCCGCGCTCGGGCGCCTGACCGCCGGCATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATCCAGGATCACTCCCAGCGCATGAACCGAGTCATTGAAAACGTCCTGCAACTGTCGCGCCGCCAGC
AAAGCGCGCCGCAGCGGCTCGATCTCGAACCCTGGCTCGCGCAGTTCGTCGACGAAAGCCGTGAACAGGCCAGCGAGCGC
CAGCGGATTCATCTGCATATCGAATCCGGGGATTTCCGCACCCTGATGGACCCGGGCCAACTGACGCAAATTCTCGACAA
TCTGTTGCGCAACGGCTGGCGGCACAGCGCCCTGTTGCACGATCCGGCGGAGGTCTGGCTGCGGCTGTTCATCGACCCTG
AAAGCCAGTTGGCCGTGCTTGAAGTACAAGACAACGGCCCCGGTGTGGCGCTGGATCAGCAAGCCCATCTGTTCGAACCT
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603