Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   JHW41_RS20075 Genome accession   NZ_CP067396
Coordinates   4855907..4856965 (-) Length   352 a.a.
NCBI ID   WP_057946404.1    Uniprot ID   A0A1H3RK90
Organism   Lysobacter enzymogenes strain CX06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4850907..4861965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW41_RS20055 (JHW41_19955) pilQ 4851714..4853750 (-) 2037 WP_101943785.1 type IV pilus secretin PilQ -
  JHW41_RS20060 (JHW41_19960) - 4853826..4854362 (-) 537 WP_250444979.1 pilus assembly protein PilP -
  JHW41_RS20065 (JHW41_19965) pilO 4854379..4855062 (-) 684 WP_057946406.1 type 4a pilus biogenesis protein PilO -
  JHW41_RS20070 (JHW41_19970) - 4855059..4855907 (-) 849 WP_250444989.1 PilN domain-containing protein -
  JHW41_RS20075 (JHW41_19975) pilM 4855907..4856965 (-) 1059 WP_057946404.1 pilus assembly protein PilM Machinery gene
  JHW41_RS20080 (JHW41_19980) - 4857577..4860144 (+) 2568 WP_250445006.1 penicillin-binding protein 1A -
  JHW41_RS20085 (JHW41_19985) - 4860588..4861241 (+) 654 WP_078997211.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37713.05 Da        Isoelectric Point: 4.6373

>NTDB_id=525876 JHW41_RS20075 WP_057946404.1 4855907..4856965(-) (pilM) [Lysobacter enzymogenes strain CX06]
MGLITKSQPALVGVDISSTAVKLLQLSRAGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIKRAVARSGTRAKHAAAA
VAGSSVITRVIGMPADLDEDDLESQVELEAANYVPYPIDEVNHDFEVLGPMPGSPDMIQVLLAASRSENVEVRASALELG
GLTPRVMDVEAFAIENAFALLADTLSGPRDGLVALVDSGATMTTLNVLRNGRSLYHREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYQAEVLEPFKEAMVQQVSRLLQFFYAGSEFNRVDQIVLAGGGASIPRIAEMVEEQLGIPTTVANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=525876 JHW41_RS20075 WP_057946404.1 4855907..4856965(-) (pilM) [Lysobacter enzymogenes strain CX06]
GTGGGACTCATCACAAAAAGCCAGCCGGCTCTCGTCGGCGTGGACATCAGTTCGACCGCGGTAAAGTTGCTGCAACTTTC
GCGTGCGGGCAATCGCTACCGCGTTGAGCATTACGCGGTCGAGCCGTTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAGGTCGAAGCGGTGGGCGAGGCGATCAAACGCGCCGTGGCCCGCTCGGGGACCCGCGCCAAGCACGCCGCCGCGGCG
GTCGCCGGTTCCTCGGTGATCACCCGCGTCATCGGCATGCCGGCCGACCTGGACGAGGACGATCTGGAGTCGCAGGTCGA
GCTGGAAGCGGCGAACTACGTGCCGTATCCGATCGACGAGGTCAACCACGATTTCGAAGTGCTCGGCCCGATGCCGGGCA
GCCCGGACATGATCCAGGTGCTGCTCGCCGCGTCGCGTTCGGAGAACGTGGAAGTGCGCGCCTCGGCGCTGGAGCTCGGC
GGCCTGACCCCGCGGGTCATGGACGTGGAAGCCTTCGCGATCGAGAACGCGTTCGCGCTGCTCGCCGACACCCTCAGCGG
GCCGCGCGACGGCCTGGTCGCCCTGGTCGACTCGGGCGCGACCATGACCACGCTCAACGTCCTGCGCAACGGCCGCAGCC
TCTATCACCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGGTCATGCGCCGTTACGGCCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACCAGGCCGAGGTGTTGGAGCCGTTCAAGGAAGCCATGGT
CCAGCAGGTCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAGTTCAACCGCGTCGACCAGATCGTCCTGGCCGGCG
GCGGCGCCTCGATCCCGCGCATCGCCGAGATGGTCGAAGAGCAGCTCGGCATCCCGACCACGGTGGCCAATCCGCTCGCG
CACATGACCCTGGGGCCGCGCGTGCAGGCGCACGCGCTGGCGCAGGACGCTCCCGCGCTGATGATCGCCTGCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3RK90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.284

100

0.503
  comM Acinetobacter nosocomialis M2

50

100

0.5
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

43.626

100

0.437