Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   JHW38_RS21285 Genome accession   NZ_CP067395
Coordinates   5036954..5038012 (+) Length   352 a.a.
NCBI ID   WP_207523292.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain CX03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5031954..5043012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW38_RS21275 (JHW38_21275) - 5032740..5033393 (-) 654 WP_207523290.1 hypothetical protein -
  JHW38_RS21280 (JHW38_21280) - 5033780..5036344 (-) 2565 WP_207523291.1 penicillin-binding protein 1A -
  JHW38_RS21285 (JHW38_21285) pilM 5036954..5038012 (+) 1059 WP_207523292.1 pilus assembly protein PilM Machinery gene
  JHW38_RS21290 (JHW38_21290) - 5038012..5038833 (+) 822 WP_207523293.1 PilN domain-containing protein -
  JHW38_RS21295 (JHW38_21295) pilO 5038830..5039528 (+) 699 WP_207523294.1 type 4a pilus biogenesis protein PilO -
  JHW38_RS21300 (JHW38_21300) - 5039530..5040087 (+) 558 WP_207523295.1 pilus assembly protein PilP -
  JHW38_RS21305 (JHW38_21305) pilQ 5040163..5042199 (+) 2037 WP_207523296.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37729.09 Da        Isoelectric Point: 4.6373

>NTDB_id=525857 JHW38_RS21285 WP_207523292.1 5036954..5038012(+) (pilM) [Lysobacter enzymogenes strain CX03]
MGLITKSQPALVGVDISSTAVKLLQLSRAGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIKRAVARSGTRVKHAAAA
VAGSSVITRVIGMPADLDEDDLESQVELEAANYVPYPIDEVNHDFEVLGPMPGSPDMVQVLLAASRSENVEVRASALELG
GLTPKVMDVEAFAIENAFALLADTLSSPRDGLVALVDSGATMTTLNVLRNGRSLYHREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYQAEVLEPFKEAMVQQVSRLLQFFYAGSEFNRVDQIVLAGGGASIPRIAEMVEEQLGIPTTVANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=525857 JHW38_RS21285 WP_207523292.1 5036954..5038012(+) (pilM) [Lysobacter enzymogenes strain CX03]
GTGGGACTCATCACAAAAAGCCAGCCGGCTCTCGTCGGCGTGGATATCAGTTCGACCGCGGTAAAGTTGCTGCAACTTTC
GCGTGCCGGCAATCGCTACCGCGTTGAGCATTACGCGGTCGAGCCGTTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAGGTCGAAGCGGTGGGCGAGGCGATCAAACGCGCCGTCGCCCGCTCGGGGACCCGCGTCAAGCACGCCGCCGCGGCG
GTCGCCGGTTCCTCGGTGATCACCCGCGTCATCGGCATGCCGGCCGACCTGGACGAAGACGATCTGGAGTCGCAGGTCGA
GCTGGAAGCGGCCAATTACGTGCCGTATCCGATCGATGAGGTCAACCACGATTTCGAAGTGCTCGGCCCGATGCCGGGCA
GCCCGGATATGGTCCAGGTGCTGCTGGCGGCCTCGCGCTCGGAGAACGTGGAGGTGCGCGCCTCGGCGCTGGAGCTCGGC
GGCCTGACCCCGAAGGTCATGGACGTGGAAGCCTTCGCGATCGAGAACGCGTTCGCGCTGCTCGCCGACACCTTGAGCAG
CCCGCGCGACGGCCTGGTCGCCCTGGTCGACTCCGGCGCGACCATGACCACGCTGAACGTGTTGCGCAACGGCCGCAGCC
TGTATCACCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGGTCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGTCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACCAGGCCGAAGTGCTGGAGCCGTTCAAGGAAGCGATGGT
CCAGCAGGTCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAACCGCGTCGACCAGATCGTCCTGGCCGGCG
GCGGCGCCTCGATCCCGCGCATCGCCGAGATGGTGGAAGAGCAGCTCGGCATTCCGACCACGGTGGCCAACCCGCTCGCC
CACATGACCCTGGGGCCGCGCGTGCAGGCGCACGCGTTGGCGCAGGACGCTCCCGCGCTGATGATCGCCTGCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

44.193

100

0.443