Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JHW38_RS11185 Genome accession   NZ_CP067395
Coordinates   2694920..2696344 (+) Length   474 a.a.
NCBI ID   WP_207525976.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain CX03     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2689920..2701344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW38_RS11160 (JHW38_11160) - 2690089..2690385 (-) 297 WP_207525971.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JHW38_RS11165 (JHW38_11165) - 2690382..2690672 (-) 291 WP_207525972.1 CopG family transcriptional regulator -
  JHW38_RS11170 (JHW38_11170) sucD 2690797..2691672 (-) 876 WP_207525973.1 succinate--CoA ligase subunit alpha -
  JHW38_RS11175 (JHW38_11175) sucC 2691685..2692851 (-) 1167 WP_207525974.1 ADP-forming succinate--CoA ligase subunit beta -
  JHW38_RS11180 (JHW38_11180) - 2693197..2694822 (+) 1626 WP_207525975.1 ATP-binding protein -
  JHW38_RS11185 (JHW38_11185) pilR 2694920..2696344 (+) 1425 WP_207525976.1 sigma-54 dependent transcriptional regulator Regulator
  JHW38_RS11190 (JHW38_11190) pilA 2696969..2697391 (+) 423 WP_207525977.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JHW38_RS25700 (JHW38_11195) pilA2 2698233..2698655 (+) 423 WP_207525978.1 pilin Machinery gene
  JHW38_RS25705 - 2698729..2699220 (+) 492 WP_278249813.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JHW38_RS11205 (JHW38_11205) - 2699343..2701235 (+) 1893 WP_207525979.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 51053.58 Da        Isoelectric Point: 7.1124

>NTDB_id=525849 JHW38_RS11185 WP_207525976.1 2694920..2696344(+) (pilR) [Lysobacter enzymogenes strain CX03]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLNEARSQLLRNRYDLCLTDMRLPDGSGMDLVAEISQKYPNTPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLSVLRDLVRHALELHETRRNASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLAMQVKLLRAIQEKSIRPVGAQAEVTVDVRILSATHKDLAALVAEGRFRQDLYYRINVIELRVPPLRERLDDLPGLAA
KILHRLAGTQGRVVPRLGDDALEALRAYTFPGNVRELENILERALALAEGEVLSASDLRLPRLATQGGPAATAAPGAAPA
AAGQPALPPGAVDPRTISPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=525849 JHW38_RS11185 WP_207525976.1 2694920..2696344(+) (pilR) [Lysobacter enzymogenes strain CX03]
ATGGCTGAAACCCGTAGTGCATTGGTGGTCGACGACGAACGCGACATTCGCGAGCTGCTCGTCATGACCTTGGGCCGCAT
GGGCCTTCGTTGCGACACCGCGTCGGGCCTCAACGAGGCTCGCAGCCAGCTGCTGCGCAATCGTTACGATTTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGGTCGCCGAGATCAGCCAGAAGTATCCGAACACGCCGGTGGCG
ATGATCACCGCGTTCGGCAACGTCGAGGCCGCGGTGGAAGCGCTCAAGGCCGGCGCGTTCGATTTCGTCGCCAAGCCGGT
CGACCTGTCGGTGCTGCGCGACCTGGTCCGCCACGCGCTGGAACTGCACGAAACCCGGCGCAACGCCAGCGAAGCGGTCG
GCTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAGCTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCG
GTGTACATCGCCGGCGAATCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCATTCCGAGGGCGGGCGCGCCGACGG
ACCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTCGACGAAGTCGCCGAG
CTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCCGGTCGGCGCTCAGGCCGAAGT
CACCGTCGACGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGCCGCGCTGGTCGCCGAAGGCCGCTTCCGCCAGGACT
TGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCTGGACGACCTGCCCGGCCTGGCCGCC
AAGATCCTGCACCGCCTCGCCGGCACCCAGGGCCGGGTGGTGCCGCGCCTCGGCGACGACGCCCTGGAAGCGCTGCGCGC
CTATACCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCCCTGGCCGAAGGCGAAGTCCTCA
GCGCCAGCGATCTGCGCCTGCCGCGCCTGGCCACCCAGGGCGGCCCCGCCGCGACCGCCGCCCCCGGCGCCGCGCCGGCC
GCCGCGGGCCAGCCAGCGCTGCCGCCCGGCGCAGTCGACCCGCGCACGATCAGCCCGCGCGACACCGCCACCAGCGCGCT
GCCGTCGTACATCGAAGAGATCGAGCGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGCACCG
CGGCGGCGCTGGGGATCACGTTCCGGGCGCTGCGCTACAAGCTCAAGAAGCTCGGGATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(431-471)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.633

99.367

0.622
  pilR Acinetobacter baumannii strain A118

48.75

100

0.494