Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHT90_RS01675 Genome accession   NZ_CP067393
Coordinates   363193..363732 (-) Length   179 a.a.
NCBI ID   WP_201093305.1    Uniprot ID   A0A974NGC1
Organism   Entomomonas asaccharolytica strain F2A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 358193..368732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT90_RS01645 (JHT90_01645) - 358359..358844 (+) 486 WP_201093290.1 Fur family transcriptional regulator -
  JHT90_RS01650 (JHT90_01650) znuC 358850..359617 (+) 768 WP_201095716.1 zinc ABC transporter ATP-binding protein ZnuC -
  JHT90_RS01655 (JHT90_01655) znuB 359610..360401 (+) 792 WP_201093292.1 zinc ABC transporter permease subunit ZnuB -
  JHT90_RS01660 (JHT90_01660) panC 360454..361284 (-) 831 WP_201093294.1 pantoate--beta-alanine ligase -
  JHT90_RS01665 (JHT90_01665) - 361455..361793 (-) 339 WP_201093296.1 zinc ribbon domain-containing protein YjdM -
  JHT90_RS01670 (JHT90_01670) adhP 361957..362979 (-) 1023 WP_201093303.1 alcohol dehydrogenase AdhP -
  JHT90_RS01675 (JHT90_01675) ssb 363193..363732 (-) 540 WP_201093305.1 single-stranded DNA-binding protein Machinery gene
  JHT90_RS01680 (JHT90_01680) - 364489..364797 (+) 309 WP_201093307.1 hypothetical protein -
  JHT90_RS01685 (JHT90_01685) argH 364884..366278 (-) 1395 WP_201095717.1 argininosuccinate lyase -
  JHT90_RS01690 (JHT90_01690) - 366366..367322 (+) 957 WP_201093309.1 glycosyltransferase -
  JHT90_RS01695 (JHT90_01695) - 367626..368663 (+) 1038 WP_201093311.1 amidohydrolase family protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19948.09 Da        Isoelectric Point: 4.9401

>NTDB_id=525813 JHT90_RS01675 WP_201093305.1 363193..363732(-) (ssb) [Entomomonas asaccharolytica strain F2A]
MAARGINKVILVGNIGNEPEMRYMPNGNAVATVSLATSDTWKDKNTGEQQERTEWHRVVFFGKLAEIVGQYVHKGSKLYV
EGRLQTRKWTDQQGVDRYSTEIIVDMGGTMQLLDSRQGGDAGGYQPPPQPYQQQAAAGNQYGGQPAPAQQPMQQPQNRPQ
QQPQQPAPNFDDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=525813 JHT90_RS01675 WP_201093305.1 363193..363732(-) (ssb) [Entomomonas asaccharolytica strain F2A]
ATGGCAGCTAGAGGTATTAACAAAGTTATTTTAGTAGGCAACATTGGTAATGAACCAGAAATGCGTTATATGCCTAATGG
CAATGCTGTAGCTACTGTTTCATTAGCTACATCTGACACATGGAAAGATAAAAATACTGGTGAACAACAAGAGCGTACAG
AATGGCATCGCGTAGTATTTTTTGGCAAACTAGCTGAAATTGTTGGTCAGTATGTACATAAAGGTTCTAAACTTTATGTA
GAAGGTCGTTTACAAACCCGTAAATGGACGGATCAACAAGGTGTAGATCGTTATTCTACAGAAATCATTGTTGATATGGG
CGGCACAATGCAATTACTAGATAGCCGCCAAGGTGGCGATGCTGGTGGTTATCAACCTCCACCACAACCTTATCAACAAC
AAGCAGCTGCAGGTAATCAATATGGTGGGCAGCCTGCGCCAGCACAACAACCTATGCAACAACCACAAAATCGTCCTCAA
CAGCAGCCACAACAACCTGCACCAAACTTTGACGATTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.978

100

0.575
  ssb Glaesserella parasuis strain SC1401

53.191

100

0.559
  ssb Neisseria gonorrhoeae MS11

43.646

100

0.441
  ssb Neisseria meningitidis MC58

42.308

100

0.43