Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJJ11_RS27560 Genome accession   NZ_CP067391
Coordinates   5356452..5356979 (-) Length   175 a.a.
NCBI ID   WP_004097799.1    Uniprot ID   A0A0J2K732
Organism   Klebsiella grimontii strain 5512.56     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5351452..5361979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJJ11_RS27550 (JJJ11_27535) - 5351935..5354196 (-) 2262 WP_004137536.1 TonB-dependent siderophore receptor -
  JJJ11_RS27555 (JJJ11_27540) - 5354803..5356365 (+) 1563 WP_209573680.1 lytic transglycosylase F -
  JJJ11_RS27560 (JJJ11_27545) ssb 5356452..5356979 (-) 528 WP_004097799.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JJJ11_RS27565 (JJJ11_27550) uvrA 5357226..5360051 (+) 2826 WP_004097797.1 excinuclease ABC subunit UvrA -
  JJJ11_RS27570 (JJJ11_27555) - 5360184..5360414 (+) 231 WP_064362635.1 hypothetical protein -
  JJJ11_RS27575 (JJJ11_27560) - 5360450..5360614 (+) 165 WP_004137542.1 hypothetical protein -
  JJJ11_RS27580 (JJJ11_27565) - 5360623..5360976 (-) 354 WP_004127822.1 MmcQ/YjbR family DNA-binding protein -
  JJJ11_RS27585 (JJJ11_27570) - 5360979..5361395 (-) 417 WP_024360189.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18776.81 Da        Isoelectric Point: 5.2456

>NTDB_id=525782 JJJ11_RS27560 WP_004097799.1 5356452..5356979(-) (ssb) [Klebsiella grimontii strain 5512.56]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=525782 JJJ11_RS27560 WP_004097799.1 5356452..5356979(-) (ssb) [Klebsiella grimontii strain 5512.56]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGCCAGCTGCGTACGCGTAAATGGACTGACCAATCCGGTCAGGAAAAATACACCACCGAAGTTGTGGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCAGGCGCCCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCTCCGGCAGCC
CCTTCCAATGAGCCGCCGATGGACTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2K732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.611
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491