Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JG560_RS19200 Genome accession   NZ_CP067369
Coordinates   4088089..4088619 (-) Length   176 a.a.
NCBI ID   WP_000168315.1    Uniprot ID   A0A0K0HGJ5
Organism   Salmonella bongori strain Se40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4083089..4093619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG560_RS19185 (JG560_19185) - 4083686..4085005 (-) 1320 WP_000694084.1 TolC family protein -
  JG560_RS19190 (JG560_19190) - 4084995..4086383 (-) 1389 WP_000864661.1 MotA/TolQ/ExbB proton channel family protein -
  JG560_RS19195 (JG560_19195) - 4086380..4087012 (-) 633 WP_000389248.1 hypothetical protein -
  JG560_RS19200 (JG560_19200) ssb 4088089..4088619 (-) 531 WP_000168315.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JG560_RS19205 (JG560_19205) uvrA 4088867..4091692 (+) 2826 WP_000357727.1 excinuclease ABC subunit UvrA -
  JG560_RS19210 (JG560_19210) - 4091824..4092279 (+) 456 WP_000427862.1 hypothetical protein -
  JG560_RS19215 (JG560_19215) - 4092266..4092604 (+) 339 WP_000146605.1 hypothetical protein -
  JG560_RS19220 (JG560_19220) - 4092605..4092961 (-) 357 WP_000155668.1 MmcQ/YjbR family DNA-binding protein -
  JG560_RS19225 (JG560_19225) - 4092964..4093380 (-) 417 WP_000270361.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19131.20 Da        Isoelectric Point: 5.2456

>NTDB_id=525682 JG560_RS19200 WP_000168315.1 4088089..4088619(-) (ssb) [Salmonella bongori strain Se40]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQNGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSTP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=525682 JG560_RS19200 WP_000168315.1 4088089..4088619(-) (ssb) [Salmonella bongori strain Se40]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCTAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAAACGG
AATGGCACCGTGTCGTCATGTTCGGCAAACTGGCGGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCACAGGTGTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAAATGGCCAGGAGCGATATACGACTGAAATTAACGTTCCGCAGAT
TGGCGGCGTGATGCAGATGTTAGGTGGCCGTCAGGGCGGCGGCGCGCCAGCAGGCGGCCAACAGCAGGGTGGTTGGGGTC
AGCCACAACAACCTCAGCAACCGCAGGGCGGCAACCAGTTCAGTGGTGGCGCCCAGTCGCGTCCACAGCAATCCACGCCG
GCTCCGTCTAACGAACCGCCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0HGJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.429

100

0.739
  ssb Glaesserella parasuis strain SC1401

60.656

100

0.631
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477