Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BN118_RS15230 Genome accession   NC_018518
Coordinates   3246860..3247360 (-) Length   166 a.a.
NCBI ID   WP_003806953.1    Uniprot ID   A0AAI9J3I7
Organism   Bordetella pertussis 18323     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3241860..3252360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN118_RS15205 (BN118_2958) - 3242212..3243228 (-) 1017 WP_014905995.1 tripartite tricarboxylate transporter substrate-binding protein -
  BN118_RS20895 (BN118_2959) - 3243257..3243945 (-) 689 Protein_3025 HpcH/HpaI aldolase family protein -
  BN118_RS15220 (BN118_2960) - 3243964..3244467 (-) 504 WP_023852866.1 2,4'-dihydroxyacetophenone dioxygenase family protein -
  BN118_RS15225 (BN118_2961) - 3244498..3246687 (-) 2190 WP_014905996.1 TonB-dependent siderophore receptor -
  BN118_RS15230 (BN118_2962) ssb 3246860..3247360 (-) 501 WP_003806953.1 single-stranded DNA-binding protein Machinery gene
  BN118_RS15235 (BN118_2963) - 3247593..3248777 (-) 1185 WP_014905997.1 MFS transporter -
  BN118_RS15240 (BN118_2964) uvrA 3248933..3251791 (+) 2859 WP_014905998.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18100.09 Da        Isoelectric Point: 5.9609

>NTDB_id=52556 BN118_RS15230 WP_003806953.1 3246860..3247360(-) (ssb) [Bordetella pertussis 18323]
MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDSGGDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=52556 BN118_RS15230 WP_003806953.1 3246860..3247360(-) (ssb) [Bordetella pertussis 18323]
ATGGCATCCGTCAACAAAGTCATTCTCGTCGGCAATCTGGGTCGCGACCCGGAAGTGCGTTACAGCCCGGATGGGGCGGC
CATCTGCAACGTGTCGATCGCCACGACCTCGCAATGGAAGGACAAGGCCAGCGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAAATCGCGGGCGAATACCTGAAGAAGGGGCGTTCGGTCTACATCGAGGGC
CGCCTGAAGACCCGCAAATGGCAAGACAAGGACACCGGCGCCGACCGCTACAGCACCGAAATCGTGGCCGACCAGATGCA
GATGCTGGGCGGGCGCGATAGCGGCGGCGACAGCGGCGGCGGTTACGGCGGTGGCTACGACGACGCACCGCGCCAGCAGC
GCGCCCCGGCCCAGCGCCCGGCGGCCGCCCCGCAGCGCCCCGCGCCGCAGGCCGCGCCGGCCGCCAACCTGGCCGACATG
GACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.688

100

0.59
  ssb Neisseria meningitidis MC58

52.778

100

0.572
  ssb Glaesserella parasuis strain SC1401

51.63

100

0.572
  ssb Neisseria gonorrhoeae MS11

51.667

100

0.56

Multiple sequence alignment