Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   T15_RS08710 Genome accession   NC_022665
Coordinates   1723368..1724012 (+) Length   214 a.a.
NCBI ID   WP_023371228.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1718368..1729012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS08690 (T15_1733) pflA 1719508..1720299 (-) 792 WP_023371222.1 pyruvate formate-lyase-activating protein -
  T15_RS08695 (T15_1734) - 1720416..1721753 (-) 1338 WP_002942867.1 hemolysin family protein -
  T15_RS08700 (T15_1735) - 1721886..1722665 (+) 780 WP_023371224.1 ABC transporter ATP-binding protein -
  T15_RS08705 (T15_1736) - 1722681..1723235 (-) 555 WP_023371226.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  T15_RS08710 (T15_1737) cclA/cilC 1723368..1724012 (+) 645 WP_023371228.1 prepilin peptidase Machinery gene
  T15_RS08715 (T15_1738) - 1724120..1725580 (+) 1461 WP_012027590.1 nicotinate phosphoribosyltransferase -
  T15_RS08720 (T15_1739) nadE 1725593..1726417 (+) 825 WP_023371230.1 ammonia-dependent NAD(+) synthetase -
  T15_RS08725 (T15_1740) trpB 1726459..1727634 (-) 1176 WP_023371232.1 tryptophan synthase subunit beta -
  T15_RS08730 (T15_1741) - 1728369..1728896 (-) 528 WP_023371234.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24215.29 Da        Isoelectric Point: 8.2867

>NTDB_id=52552 T15_RS08710 WP_023371228.1 1723368..1724012(+) (cclA/cilC) [Streptococcus suis T15]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPILSQLSTNSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLIFTFIALILSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFISSIPIILCT

Nucleotide


Download         Length: 645 bp        

>NTDB_id=52552 T15_RS08710 WP_023371228.1 1723368..1724012(+) (cclA/cilC) [Streptococcus suis T15]
ATGAAGACAATTATCTTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCCTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCACCCTCTAGTCACTGCAATGCCTGCAAACGACGGCTCAAGGCTTGGGATCTCATACCAATTCTGTCCC
AACTTTCCACAAATTCCAAATGTCGTTACTGCAAGGCGAAAATTCCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCATTTTTACTTTTATAGCTCTGATACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTAGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTCATTTCAAGTATTCCTATCATTCTGTGCA
CCTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.528

99.065

0.491
  cclA/cilC Streptococcus pneumoniae Rx1

49.029

96.262

0.472
  cclA/cilC Streptococcus pneumoniae D39

49.029

96.262

0.472
  cclA/cilC Streptococcus pneumoniae R6

49.029

96.262

0.472
  cclA/cilC Streptococcus pneumoniae TIGR4

48.058

96.262

0.463
  cclA/cilC Streptococcus mitis NCTC 12261

45.755

99.065

0.453

Multiple sequence alignment