Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJB14_RS24940 Genome accession   NZ_CP067261
Coordinates   5126476..5127003 (-) Length   175 a.a.
NCBI ID   WP_008807292.1    Uniprot ID   A0A087FPL6
Organism   Klebsiella variicola strain E25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5121476..5132003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB14_RS24930 (JJB14_24925) - 5121898..5124156 (-) 2259 WP_008807289.1 TonB-dependent siderophore receptor -
  JJB14_RS24935 (JJB14_24930) - 5124745..5126325 (+) 1581 WP_012543186.1 lytic transglycosylase F -
  JJB14_RS24940 (JJB14_24935) ssb 5126476..5127003 (-) 528 WP_008807292.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JJB14_RS24945 (JJB14_24940) uvrA 5127255..5130080 (+) 2826 WP_084441682.1 excinuclease ABC subunit UvrA -
  JJB14_RS24950 (JJB14_24945) - 5130081..5130437 (-) 357 WP_048267325.1 MmcQ/YjbR family DNA-binding protein -
  JJB14_RS24955 (JJB14_24950) - 5130441..5130857 (-) 417 WP_008807295.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JJB14_RS24960 (JJB14_24955) aphA 5130988..5131701 (-) 714 WP_008807296.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18812.80 Da        Isoelectric Point: 5.2456

>NTDB_id=525320 JJB14_RS24940 WP_008807292.1 5126476..5127003(-) (ssb) [Klebsiella variicola strain E25]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=525320 JJB14_RS24940 WP_008807292.1 5126476..5127003(-) (ssb) [Klebsiella variicola strain E25]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGCGAGTATCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGAGAAATACACCACCGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGTGGCGGCGCGCCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCT
TCTTCTAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087FPL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.586

100

0.771
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.617
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497