Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JJB16_RS00920 | Genome accession | NZ_CP067250 |
| Coordinates | 198425..198961 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain ESBL_DR28 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 174749..220341 | 198425..198961 | within | 0 |
Gene organization within MGE regions
Location: 174749..220341
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB16_RS00815 (JJB16_00815) | - | 175003..176583 (+) | 1581 | Protein_151 | SopA family protein | - |
| JJB16_RS00820 (JJB16_00820) | ubiC | 176806..177303 (+) | 498 | WP_001326644.1 | chorismate lyase | - |
| JJB16_RS00825 (JJB16_00825) | ubiA | 177316..178188 (+) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| JJB16_RS00830 (JJB16_00830) | plsB | 178343..180766 (-) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| JJB16_RS00835 (JJB16_00835) | dgkA | 180937..181305 (+) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| JJB16_RS00840 (JJB16_00840) | lexA | 181415..182023 (+) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| JJB16_RS00845 (JJB16_00845) | dinF | 182096..183421 (+) | 1326 | WP_001326646.1 | MATE family efflux transporter DinF | - |
| JJB16_RS00850 (JJB16_00850) | yjbJ | 183537..183746 (+) | 210 | WP_001030593.1 | CsbD family protein | - |
| JJB16_RS00855 (JJB16_00855) | zur | 183788..184303 (-) | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| JJB16_RS24305 | yjbL | 184621..184875 (+) | 255 | WP_000912571.1 | protein YjbL | - |
| JJB16_RS00860 (JJB16_00860) | yjbM | 184899..185606 (+) | 708 | WP_001311303.1 | DUF2713 domain-containing protein | - |
| JJB16_RS00865 (JJB16_00865) | dusA | 185969..187006 (+) | 1038 | WP_001298868.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| JJB16_RS00870 (JJB16_00870) | pspG | 187140..187382 (+) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| JJB16_RS00875 (JJB16_00875) | qorA | 187548..188531 (-) | 984 | WP_000235508.1 | quinone oxidoreductase | - |
| JJB16_RS00880 (JJB16_00880) | dnaB | 188614..190029 (+) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| JJB16_RS00885 (JJB16_00885) | alr | 190082..191161 (+) | 1080 | WP_001147328.1 | alanine racemase | - |
| JJB16_RS00890 (JJB16_00890) | tyrB | 191414..192607 (+) | 1194 | WP_000486985.1 | aromatic amino acid transaminase | - |
| JJB16_RS00895 (JJB16_00895) | yjbS | 193109..193312 (-) | 204 | WP_001321562.1 | protein YjbS | - |
| JJB16_RS00900 (JJB16_00900) | aphA | 193714..194427 (+) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| JJB16_RS00905 (JJB16_00905) | yjbQ | 194538..194954 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| JJB16_RS00910 (JJB16_00910) | yjbR | 194958..195314 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| JJB16_RS00915 (JJB16_00915) | uvrA | 195349..198171 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| JJB16_RS00920 (JJB16_00920) | ssb | 198425..198961 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| JJB16_RS00925 (JJB16_00925) | - | 199120..200367 (+) | 1248 | WP_000414651.1 | site-specific integrase | - |
| JJB16_RS00930 (JJB16_00930) | - | 200354..201892 (+) | 1539 | WP_001333349.1 | site-specific integrase | - |
| JJB16_RS24090 | - | 201909..202274 (+) | 366 | WP_224434066.1 | hypothetical protein | - |
| JJB16_RS00935 (JJB16_00935) | - | 202284..203942 (+) | 1659 | WP_224434065.1 | integrase | - |
| JJB16_RS00940 (JJB16_00940) | - | 203935..204354 (+) | 420 | WP_001062122.1 | hypothetical protein | - |
| JJB16_RS00945 (JJB16_00945) | - | 204408..205376 (+) | 969 | WP_000654804.1 | IS5-like element IS903B family transposase | - |
| JJB16_RS00950 (JJB16_00950) | avs4 | 205496..210259 (+) | 4764 | WP_000240574.1 | AVAST type 4 anti-phage nuclease Avs4 | - |
| JJB16_RS00955 (JJB16_00955) | - | 210798..211619 (-) | 822 | WP_001272932.1 | abortive infection system antitoxin AbiGi family protein | - |
| JJB16_RS00960 (JJB16_00960) | yjcB | 212027..212308 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
| JJB16_RS00965 (JJB16_00965) | pdeC | 212738..214324 (+) | 1587 | WP_000019548.1 | c-di-GMP phosphodiesterase PdeC | - |
| JJB16_RS00970 (JJB16_00970) | soxS | 214327..214650 (-) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| JJB16_RS00975 (JJB16_00975) | soxR | 214736..215200 (+) | 465 | WP_000412430.1 | redox-sensitive transcriptional activator SoxR | - |
| JJB16_RS00980 (JJB16_00980) | ghxP | 215746..217095 (+) | 1350 | WP_000106882.1 | guanine/hypoxanthine transporter GhxP | - |
| JJB16_RS00985 (JJB16_00985) | yjcE | 217246..218895 (+) | 1650 | WP_000402207.1 | Na+/H+ antiporter | - |
| JJB16_RS00990 (JJB16_00990) | espX5 | 219049..220341 (-) | 1293 | WP_001270095.1 | T3SS effector pentapeptide repeat protein EspX5 | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=525258 JJB16_RS00920 WP_000168305.1 198425..198961(+) (ssb) [Escherichia coli strain ESBL_DR28]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=525258 JJB16_RS00920 WP_000168305.1 198425..198961(+) (ssb) [Escherichia coli strain ESBL_DR28]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |