Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JGR78_RS02425 Genome accession   NZ_CP067225
Coordinates   481660..482193 (+) Length   177 a.a.
NCBI ID   WP_182791402.1    Uniprot ID   A0A7W4CJU6
Organism   Paracoccus sp. MC1862     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 476660..487193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR78_RS02400 (JGR78_02400) - 476944..477948 (-) 1005 WP_182791407.1 tyrosine recombinase -
  JGR78_RS02405 (JGR78_02405) - 477945..479555 (-) 1611 WP_182791406.1 hypothetical protein -
  JGR78_RS02410 (JGR78_02410) - 479542..479760 (-) 219 WP_182791405.1 hypothetical protein -
  JGR78_RS02415 (JGR78_02415) - 479959..480495 (+) 537 WP_182791404.1 shikimate kinase -
  JGR78_RS02420 (JGR78_02420) aroB 480492..481592 (+) 1101 WP_182803965.1 3-dehydroquinate synthase -
  JGR78_RS02425 (JGR78_02425) ssb 481660..482193 (+) 534 WP_182791402.1 single-stranded DNA-binding protein Machinery gene
  JGR78_RS02430 (JGR78_02430) - 482343..482996 (+) 654 WP_182803967.1 lytic transglycosylase domain-containing protein -
  JGR78_RS02435 (JGR78_02435) - 483049..484269 (-) 1221 WP_200559410.1 glycosyltransferase -
  JGR78_RS02440 (JGR78_02440) hemB 484365..485369 (-) 1005 WP_182791400.1 porphobilinogen synthase -
  JGR78_RS02445 (JGR78_02445) - 485495..486055 (+) 561 WP_182803969.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18741.46 Da        Isoelectric Point: 5.8285

>NTDB_id=525161 JGR78_RS02425 WP_182791402.1 481660..482193(+) (ssb) [Paracoccus sp. MC1862]
MAGSVNKVILIGNLGQDPEIRTFQNGGKIANLRIATSENWKDRTSGERRERTEWHTVVIHSEPLVRVAEQYLKKGMKIYI
EGQLETRKWQDQSGTDRYSTEVALRPFRSELTMLDSRGGGGGGGGGGGGGQGGGGFGGGSRGGYDEGYADSDRGPSGGGS
GSGQGRGTPDFDDEIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=525161 JGR78_RS02425 WP_182791402.1 481660..482193(+) (ssb) [Paracoccus sp. MC1862]
ATGGCAGGCAGCGTCAACAAGGTCATCCTGATCGGCAACCTGGGTCAGGACCCGGAAATCCGCACCTTCCAGAACGGCGG
CAAGATCGCCAACCTGCGGATCGCCACCTCGGAAAACTGGAAGGACCGCACCTCGGGCGAGCGGCGCGAGCGCACCGAAT
GGCACACGGTCGTGATCCACTCGGAACCGCTGGTCCGCGTGGCCGAGCAATATCTGAAGAAGGGGATGAAGATTTACATC
GAGGGCCAACTGGAAACCCGCAAGTGGCAGGACCAGTCCGGCACCGACCGTTATTCGACCGAGGTGGCGTTGCGCCCCTT
CCGCAGCGAGCTGACGATGCTGGACAGCCGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGGACAGGGCGGCG
GCGGCTTCGGAGGAGGCTCGCGCGGCGGGTATGACGAGGGCTATGCCGACTCTGACCGGGGTCCCTCTGGAGGCGGTTCG
GGCAGTGGCCAGGGCCGAGGCACGCCGGACTTCGACGACGAGATCCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4CJU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.059

100

0.497
  ssb Vibrio cholerae strain A1552

46.243

97.74

0.452
  ssb Neisseria gonorrhoeae MS11

36.813

100

0.379
  ssb Neisseria meningitidis MC58

36.813

100

0.379