Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHX87_RS01550 Genome accession   NZ_CP067136
Coordinates   297763..298260 (-) Length   165 a.a.
NCBI ID   WP_271884649.1    Uniprot ID   -
Organism   Paracoccus fistulariae strain KCTC 22803     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 292763..303260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX87_RS01530 (JHX87_01535) - 293583..293771 (-) 189 WP_271884644.1 hypothetical protein -
  JHX87_RS01535 (JHX87_01540) - 293901..294449 (+) 549 WP_271884646.1 shikimate kinase -
  JHX87_RS01540 (JHX87_01545) aroB 294446..295570 (+) 1125 WP_377776040.1 3-dehydroquinate synthase -
  JHX87_RS01545 (JHX87_01550) - 295598..297523 (-) 1926 WP_271884647.1 multiheme c-type cytochrome -
  JHX87_RS01550 (JHX87_01555) ssb 297763..298260 (-) 498 WP_271884649.1 single-stranded DNA-binding protein Machinery gene
  JHX87_RS01555 (JHX87_01560) - 298476..299102 (+) 627 WP_377776039.1 lytic transglycosylase domain-containing protein -
  JHX87_RS01560 (JHX87_01565) - 299270..300559 (-) 1290 WP_271884651.1 homoserine dehydrogenase -
  JHX87_RS01565 (JHX87_01570) - 300631..300930 (-) 300 WP_272833796.1 methyltransferase family protein -
  JHX87_RS01570 (JHX87_01575) - 301093..301635 (-) 543 WP_271884652.1 hypothetical protein -
  JHX87_RS01575 (JHX87_01580) - 301643..302452 (-) 810 WP_271884653.1 glycosyl transferase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17776.34 Da        Isoelectric Point: 5.3338

>NTDB_id=525142 JHX87_RS01550 WP_271884649.1 297763..298260(-) (ssb) [Paracoccus fistulariae strain KCTC 22803]
MAGSVNKVILIGNLGRDPEIRSFQNGGKVANLRIATSEQWKDRNTGERRERTEWHSVAIMSEGLVNVVERFLKKGSKVYV
EGQLETRKWQDQSGQDRFSTEVVLRGFNGTLQMLDGRGEGSGGGGDRGGYGGGGYGGGQDDYGQSSSSSSSSGGGRSDYD
DEIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=525142 JHX87_RS01550 WP_271884649.1 297763..298260(-) (ssb) [Paracoccus fistulariae strain KCTC 22803]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGATCGGCAATCTGGGTCGTGACCCTGAAATCCGCAGCTTCCAGAACGGCGG
CAAGGTGGCCAATCTGCGGATTGCGACCTCGGAACAATGGAAGGACCGCAATACCGGCGAACGGCGCGAGCGGACCGAAT
GGCATTCGGTGGCCATCATGTCCGAAGGCCTGGTCAACGTGGTCGAGCGTTTTCTGAAAAAGGGCAGCAAGGTCTATGTC
GAAGGCCAGCTGGAGACCCGCAAATGGCAGGACCAATCCGGTCAGGATCGCTTTTCGACCGAGGTTGTATTGCGTGGCTT
CAATGGCACCTTGCAGATGCTGGACGGTCGCGGCGAAGGTAGCGGCGGCGGCGGTGATCGCGGCGGCTATGGCGGTGGCG
GCTATGGCGGCGGTCAGGATGATTACGGGCAATCCTCGTCTTCGTCTTCCTCTTCGGGTGGCGGGCGCAGCGATTACGAC
GATGAGATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.149

100

0.539
  ssb Glaesserella parasuis strain SC1401

43.915

100

0.503
  ssb Neisseria meningitidis MC58

40.223

100

0.436
  ssb Neisseria gonorrhoeae MS11

41.615

97.576

0.406