Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHW44_RS08590 Genome accession   NZ_CP067129
Coordinates   1758556..1759032 (+) Length   158 a.a.
NCBI ID   WP_089343361.1    Uniprot ID   A0A239PR78
Organism   Paracoccus seriniphilus strain DSM 14827     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1753556..1764032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW44_RS08575 (JHW44_08570) - 1755663..1756952 (-) 1290 WP_089343364.1 homoserine dehydrogenase -
  JHW44_RS08580 (JHW44_08575) - 1757078..1757605 (-) 528 WP_089343363.1 hypothetical protein -
  JHW44_RS08585 (JHW44_08580) - 1757647..1758228 (-) 582 WP_245846870.1 lytic transglycosylase domain-containing protein -
  JHW44_RS08590 (JHW44_08585) ssb 1758556..1759032 (+) 477 WP_089343361.1 single-stranded DNA-binding protein Machinery gene
  JHW44_RS08595 (JHW44_08590) - 1759105..1760865 (-) 1761 WP_089343360.1 PHA/PHB synthase family protein -
  JHW44_RS08600 (JHW44_08595) - 1760950..1761798 (-) 849 WP_089343359.1 F0F1 ATP synthase subunit gamma -
  JHW44_RS08605 (JHW44_08600) - 1761795..1763336 (-) 1542 WP_089343358.1 F0F1 ATP synthase subunit alpha -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17285.02 Da        Isoelectric Point: 5.9744

>NTDB_id=525133 JHW44_RS08590 WP_089343361.1 1758556..1759032(+) (ssb) [Paracoccus seriniphilus strain DSM 14827]
MAGSVNKVILIGNLGRDPEIRTFQNGGKVANLRIATSEQWKDRNTGERREKTEWHSVAIMSEGLVNVVERFLRKGSKVYV
EGQLETRKWQDQSGQDRYTTEVVIRNFGGSLQMLDGRGEGGGGRDFGGGNDGGYRSEPASGSSAPAGGRSDYDDEIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=525133 JHW44_RS08590 WP_089343361.1 1758556..1759032(+) (ssb) [Paracoccus seriniphilus strain DSM 14827]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGATCGGCAATCTGGGCCGTGATCCGGAAATCCGGACATTCCAGAACGGCGG
CAAGGTCGCCAATCTGCGGATCGCCACATCCGAACAGTGGAAAGACCGCAACACCGGCGAACGGCGCGAAAAGACAGAAT
GGCATTCGGTCGCGATCATGTCCGAAGGGCTGGTCAATGTCGTCGAACGCTTCCTGAGAAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGGAAGTGGCAGGATCAATCCGGCCAGGACCGCTACACGACCGAAGTCGTCATCCGCAATTT
CGGCGGCAGTCTGCAGATGCTGGACGGTCGCGGTGAAGGTGGCGGCGGACGCGACTTTGGCGGCGGCAACGATGGTGGCT
ATCGCAGCGAACCCGCAAGCGGCAGCAGTGCCCCGGCTGGCGGGCGCAGCGATTACGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239PR78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.206

100

0.589
  ssb Vibrio cholerae strain A1552

52.023

100

0.57
  ssb Neisseria meningitidis MC58

41.667

98.734

0.411
  ssb Neisseria gonorrhoeae MS11

41.667

98.734

0.411