Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHW40_RS10290 Genome accession   NZ_CP067124
Coordinates   2006931..2007422 (+) Length   163 a.a.
NCBI ID   WP_090610135.1    Uniprot ID   A0A1H8E4Q9
Organism   Paracoccus alcaliphilus strain TK 1015 = DSM 8512     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2001931..2012422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW40_RS10260 (JHW40_10215) - 2002760..2002939 (-) 180 WP_090610141.1 DUF3553 domain-containing protein -
  JHW40_RS10265 (JHW40_10220) - 2002980..2003621 (+) 642 WP_090610140.1 histidine phosphotransferase family protein -
  JHW40_RS10270 (JHW40_10225) - 2003680..2004204 (+) 525 WP_090610139.1 hypothetical protein -
  JHW40_RS10275 (JHW40_10230) - 2004201..2004638 (+) 438 WP_090610138.1 methyltransferase family protein -
  JHW40_RS10280 (JHW40_10235) - 2004724..2006013 (+) 1290 WP_090610137.1 homoserine dehydrogenase -
  JHW40_RS10285 (JHW40_10240) - 2006116..2006742 (-) 627 WP_090610136.1 lytic transglycosylase domain-containing protein -
  JHW40_RS10290 (JHW40_10245) ssb 2006931..2007422 (+) 492 WP_090610135.1 single-stranded DNA-binding protein Machinery gene
  JHW40_RS10295 (JHW40_10250) - 2007511..2007852 (-) 342 WP_090610134.1 MmcQ/YjbR family DNA-binding protein -
  JHW40_RS10300 (JHW40_10255) - 2007849..2009192 (-) 1344 WP_090610133.1 cytochrome P450 -
  JHW40_RS10305 (JHW40_10260) - 2009189..2010382 (-) 1194 WP_090610132.1 hypothetical protein -
  JHW40_RS10310 (JHW40_10265) - 2010440..2011123 (-) 684 WP_090610131.1 M48 family metallopeptidase -
  JHW40_RS10315 (JHW40_10270) - 2011134..2012315 (-) 1182 WP_090610130.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17564.22 Da        Isoelectric Point: 5.3476

>NTDB_id=525126 JHW40_RS10290 WP_090610135.1 2006931..2007422(+) (ssb) [Paracoccus alcaliphilus strain TK 1015 = DSM 8512]
MAGSVNKVILIGNLGRDPEIRTFQNGGKVANLRIATSEQWKDRTSGERRERTEWHSVAIMSEGLVNVVERFLKKGSKVYV
EGQLETRKWQDQSGQDRYTTEVVLRGFNGTLQMLDARGEGGGGSRDSGGGYDDYRGGDSGGGSAPSGSGGGAGRADYDDE
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=525126 JHW40_RS10290 WP_090610135.1 2006931..2007422(+) (ssb) [Paracoccus alcaliphilus strain TK 1015 = DSM 8512]
ATGGCAGGCAGCGTGAACAAGGTCATTCTGATCGGCAATCTTGGCCGGGATCCAGAAATAAGGACCTTTCAGAATGGCGG
CAAGGTCGCCAACCTGCGGATCGCGACATCCGAGCAGTGGAAGGACCGCACCAGCGGCGAGCGTCGCGAGCGGACCGAAT
GGCATTCCGTCGCGATCATGTCCGAGGGGCTGGTCAATGTGGTCGAGCGGTTCCTGAAGAAGGGCTCGAAGGTCTATGTC
GAGGGGCAATTGGAAACCCGCAAATGGCAGGATCAGTCGGGGCAGGACCGCTATACCACCGAGGTGGTTCTGCGCGGCTT
CAACGGCACGTTGCAGATGCTGGATGCCCGTGGCGAAGGCGGCGGTGGCAGCCGTGACAGCGGCGGCGGCTATGACGATT
ATCGCGGTGGCGATTCGGGCGGGGGTTCAGCGCCCTCGGGTTCGGGCGGTGGTGCCGGTCGCGCCGATTATGATGACGAG
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H8E4Q9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.925

100

0.558
  ssb Vibrio cholerae strain A1552

49.133

100

0.521
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.411
  ssb Neisseria meningitidis MC58

37.43

100

0.411