Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   JGR68_RS11870 Genome accession   NZ_CP067113
Coordinates   2530608..2531666 (-) Length   352 a.a.
NCBI ID   WP_199360004.1    Uniprot ID   -
Organism   Luteimonas sp. MC1750     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2525608..2536666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR68_RS11850 (JGR68_11850) pilQ 2526689..2528644 (-) 1956 WP_199360008.1 type IV pilus secretin PilQ -
  JGR68_RS11855 (JGR68_11855) - 2528659..2529192 (-) 534 WP_199360007.1 pilus assembly protein PilP -
  JGR68_RS11860 (JGR68_11860) pilO 2529200..2529877 (-) 678 WP_199360006.1 type 4a pilus biogenesis protein PilO -
  JGR68_RS11865 (JGR68_11865) - 2529874..2530608 (-) 735 WP_199360005.1 PilN domain-containing protein -
  JGR68_RS11870 (JGR68_11870) pilM 2530608..2531666 (-) 1059 WP_199360004.1 pilus assembly protein PilM Machinery gene
  JGR68_RS11875 (JGR68_11875) - 2531905..2534385 (+) 2481 WP_199360003.1 penicillin-binding protein 1A -
  JGR68_RS11880 (JGR68_11880) - 2534431..2535087 (+) 657 WP_199360002.1 hypothetical protein -
  JGR68_RS11885 (JGR68_11885) - 2535121..2535564 (-) 444 WP_199360001.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37827.41 Da        Isoelectric Point: 4.3782

>NTDB_id=525121 JGR68_RS11870 WP_199360004.1 2530608..2531666(-) (pilM) [Luteimonas sp. MC1750]
MGLITKSQAPLVGVDISSTAVKLLQLSRSGDRYKVEHYAVEPLPPNAVVEKSIVEVEAVGEAIRRAMSRSGSRAKHAAAA
VAGSAVIIKLIPMPSDLDEDEMESQVELEAVNYIPYPIEEVNLDFEVVGAMPGNPEMVQVMLAASRSESVEMRASALELG
GLTARVMDVEAFAIENAFALLADTLNVPRDGIVALVDVGATMTTLSILRNGRSLYTREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEIEVLEPFKEALVQQISRLLQFFYAGSEFNRVDQVVLAGGCASIAGISEMVEEQLGVQTVIANPLA
QMTLGSRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=525121 JGR68_RS11870 WP_199360004.1 2530608..2531666(-) (pilM) [Luteimonas sp. MC1750]
GTGGGGCTGATCACAAAAAGCCAGGCACCGCTCGTCGGGGTCGATATCAGTTCGACAGCTGTAAAGCTGTTGCAGCTGTC
CCGGTCGGGCGACCGCTACAAGGTCGAGCACTACGCGGTCGAGCCGCTGCCGCCGAATGCCGTCGTCGAGAAGAGCATCG
TCGAGGTCGAGGCCGTCGGCGAAGCCATCCGCCGCGCGATGTCGCGCTCGGGCAGCCGGGCGAAGCATGCCGCGGCGGCG
GTCGCGGGCTCGGCGGTCATCATCAAGCTCATCCCGATGCCGTCCGACCTCGACGAGGACGAGATGGAATCGCAGGTCGA
GCTCGAGGCCGTCAACTACATCCCGTACCCGATCGAGGAAGTGAACCTCGACTTCGAGGTGGTCGGGGCGATGCCGGGCA
ACCCGGAAATGGTGCAGGTGATGCTCGCGGCCTCGCGCTCGGAGAGCGTCGAGATGCGCGCGTCCGCGCTGGAGCTTGGC
GGCCTCACCGCCCGCGTGATGGACGTCGAGGCCTTCGCGATCGAGAACGCGTTCGCGCTCCTCGCCGACACGCTCAACGT
GCCGCGCGACGGCATCGTGGCCCTGGTCGACGTCGGCGCGACGATGACCACGCTCAGCATCCTGCGCAACGGTCGCAGCC
TGTACACCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGCTACGGGCTCTCCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGACTGCCCGAGAGCTACGAGATCGAGGTGCTGGAGCCCTTCAAGGAGGCGCTGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAACCGCGTCGACCAGGTGGTCCTGGCCGGGG
GCTGCGCGTCCATCGCCGGCATCTCCGAGATGGTCGAGGAGCAGCTGGGCGTGCAGACCGTCATCGCCAATCCGCTTGCG
CAGATGACGCTCGGTTCGCGCGTGCAGGCGCATGCGCTGGCACAGGACGCGCCGGCCCTCATGATCGCCTGCGGACTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.286

99.432

0.5
  pilM Legionella pneumophila strain ERS1305867

42.493

100

0.426