Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   JGR64_RS11415 Genome accession   NZ_CP067112
Coordinates   2486647..2487705 (-) Length   352 a.a.
NCBI ID   WP_199373493.1    Uniprot ID   -
Organism   Luteimonas sp. MC1572     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2481647..2492705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR64_RS11395 (JGR64_11395) pilQ 2482755..2484713 (-) 1959 WP_199373489.1 type IV pilus secretin PilQ -
  JGR64_RS11400 (JGR64_11400) - 2484728..2485267 (-) 540 WP_199373490.1 pilus assembly protein PilP -
  JGR64_RS11405 (JGR64_11405) pilO 2485269..2485943 (-) 675 WP_199373491.1 type 4a pilus biogenesis protein PilO -
  JGR64_RS11410 (JGR64_11410) - 2485940..2486647 (-) 708 WP_199373492.1 PilN domain-containing protein -
  JGR64_RS11415 (JGR64_11415) pilM 2486647..2487705 (-) 1059 WP_199373493.1 pilus assembly protein PilM Machinery gene
  JGR64_RS11420 (JGR64_11420) - 2487938..2490427 (+) 2490 WP_199373494.1 penicillin-binding protein 1A -
  JGR64_RS11425 (JGR64_11425) - 2490476..2491129 (+) 654 WP_199373495.1 hypothetical protein -
  JGR64_RS11430 (JGR64_11430) - 2491137..2491577 (-) 441 WP_234446948.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37791.32 Da        Isoelectric Point: 4.4070

>NTDB_id=525104 JGR64_RS11415 WP_199373493.1 2486647..2487705(-) (pilM) [Luteimonas sp. MC1572]
MGLITKSQAPLVGVDISSTAVKLLQLSRSGDRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMTRSGSKAKHAAAA
VAGSAVITKVIPMPADLDEDDLESQVELEAVNYIPYPIEEVNLDFEVLGAMPGNAEMVQVLLAASRSENVEMRASALELG
GLTARVMDVEAFAIENAFALLANTLNVPRDGIVALVDIGATMTTLNILRNGRSLYTREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEIEVLEPFKEALVQQISRLLQFFYAGSEFNRVDQVVLAGGCASIGGVAEMVEEQLGVQTVVANPLA
QMTLGSRVQAHALAQDAPALMIACGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=525104 JGR64_RS11415 WP_199373493.1 2486647..2487705(-) (pilM) [Luteimonas sp. MC1572]
GTGGGGCTGATCACAAAAAGCCAGGCACCGCTCGTCGGGGTCGACATCAGTTCGACTGCGGTCAAGCTGTTGCAGCTGTC
GCGTTCGGGCGACCGGTACCGGGTCGAGCATTACGCGGTCGAGCCGCTGCCGCCCAATGCCGTCGTCGAGAAGAACATCG
TCGAGGTGGAGGCGGTCGGCGAAGCCATCCGCCGCGCCATGACGCGATCCGGCAGCAAGGCCAAGCACGCCGCGGCCGCA
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCCGCCGATCTCGACGAGGACGACCTCGAGTCGCAGGTCGA
ACTCGAGGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTCGACTTCGAGGTGCTGGGTGCCATGCCGGGCA
ACGCCGAGATGGTGCAGGTGCTGCTGGCGGCGTCGCGCTCGGAGAACGTCGAGATGCGCGCGTCCGCGCTGGAACTCGGC
GGGCTGACGGCCCGGGTCATGGACGTCGAGGCGTTCGCTATCGAGAACGCCTTCGCGCTGCTCGCCAATACGCTCAACGT
GCCGCGTGACGGCATCGTGGCGCTGGTCGACATCGGTGCCACCATGACCACGCTCAACATCCTGCGCAACGGCCGCAGCC
TCTACACCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGGTCATGCGCCGTTACGGCCTGTCCTACGAAGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATCGAAGTGCTGGAGCCGTTCAAGGAGGCGCTGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAGTTCAATCGCGTCGACCAGGTGGTGCTGGCTGGTG
GCTGCGCGTCGATCGGCGGCGTCGCCGAGATGGTCGAGGAGCAACTCGGCGTGCAGACCGTGGTCGCCAACCCGCTGGCC
CAGATGACCCTGGGTTCCCGCGTGCAGGCCCATGCGCTCGCGCAGGATGCCCCGGCGCTGATGATCGCCTGCGGCCTGGC
CATGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50

99.432

0.497
  pilM Legionella pneumophila strain ERS1305867

43.626

100

0.437