Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JGR64_RS03410 Genome accession   NZ_CP067112
Coordinates   740393..740884 (+) Length   163 a.a.
NCBI ID   WP_199375119.1    Uniprot ID   -
Organism   Luteimonas sp. MC1572     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 735393..745884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR64_RS03395 (JGR64_03395) murL 736433..737791 (+) 1359 WP_199375116.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  JGR64_RS03400 (JGR64_03400) murD 737772..739211 (+) 1440 WP_199375117.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JGR64_RS03405 (JGR64_03405) - 739208..740224 (-) 1017 WP_199375118.1 polyprenyl synthetase family protein -
  JGR64_RS03410 (JGR64_03410) ssb 740393..740884 (+) 492 WP_199375119.1 single-stranded DNA-binding protein Machinery gene
  JGR64_RS03415 (JGR64_03415) rfbB 740928..741983 (+) 1056 WP_199375120.1 dTDP-glucose 4,6-dehydratase -
  JGR64_RS03420 (JGR64_03420) rfbA 741980..742867 (+) 888 WP_200649755.1 glucose-1-phosphate thymidylyltransferase RfbA -
  JGR64_RS03425 (JGR64_03425) rfbC 742864..743421 (+) 558 WP_199375171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  JGR64_RS03430 (JGR64_03430) rfbD 743418..744323 (+) 906 WP_199375172.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17681.56 Da        Isoelectric Point: 5.3258

>NTDB_id=525092 JGR64_RS03410 WP_199375119.1 740393..740884(+) (ssb) [Luteimonas sp. MC1572]
MARGINKVIIVGNLGNDPDVKYTQSGSTITTISVATTEAWKDKQTGQQQERTEWHRVKFFGRLAEIAGEYLKKGRQVYIE
GSLRTDKYTGKDGVERYTTDIIASEMQMMGGVGEGGGGERGPRPQRQEQGDAPRRQGPPAAAGAGAGAQAPFNDDFSDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=525092 JGR64_RS03410 WP_199375119.1 740393..740884(+) (ssb) [Luteimonas sp. MC1572]
ATGGCCCGCGGCATCAACAAGGTCATCATCGTCGGCAACCTCGGCAACGACCCCGACGTGAAGTACACCCAGAGCGGCTC
CACCATCACCACCATCAGCGTGGCGACCACCGAGGCGTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAACGCACCGAGT
GGCACCGGGTGAAGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAATACCTCAAGAAGGGCCGCCAGGTCTACATCGAG
GGTTCGCTGCGCACCGACAAGTACACCGGCAAGGACGGCGTCGAGCGCTACACCACCGACATCATCGCCAGCGAGATGCA
GATGATGGGTGGCGTTGGCGAGGGCGGTGGTGGCGAGCGTGGCCCGCGCCCGCAGCGCCAGGAGCAGGGGGACGCACCGC
GTCGCCAGGGTCCGCCGGCGGCGGCCGGTGCCGGTGCTGGCGCGCAGGCGCCGTTCAATGACGATTTCTCGGACGACGAC
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

45.355

100

0.509
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.503
  ssb Vibrio cholerae strain A1552

44.944

100

0.491
  ssb Neisseria meningitidis MC58

45.143

100

0.485